| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,883,357 – 15,883,472 |
| Length | 115 |
| Max. P | 0.721500 |
| Location | 15,883,357 – 15,883,472 |
|---|---|
| Length | 115 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.99 |
| Shannon entropy | 0.12611 |
| G+C content | 0.41040 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -25.47 |
| Energy contribution | -25.54 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15883357 115 - 21146708 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGCCAGACCGAAAUUGCAUU-AAGUUGCCGCUUG-- ....((((((..(((((.....)))))...((--((..(((((((((..((((.........((((((.....))))))......))))...).)))))))).)-))).))))))...-- ( -26.86, z-score = -1.72, R) >droSim1.chr2R 14531798 115 - 19596830 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGCCAGAGCGAAAUUGCAUU-AAGUUGCCGCUUG-- ....((((((..(((((.....)))))...((--((..((((((((((.((((.........((((((.....))))))......))))..)).)))))))).)-))).))))))...-- ( -30.36, z-score = -2.26, R) >droSec1.super_1 13361180 115 - 14215200 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCCCACAAAUGAAAUCUGCCAGAGCGAAAUUGCAUU-AAGUUGCCGCUUG-- ....((((((..(((((.....)))))...((--((..((((((((((.((((.........((((((.....))))))......))))..)).)))))))).)-))).))))))...-- ( -30.36, z-score = -2.55, R) >droYak2.chr2R 7810348 115 + 21139217 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGCCAGAGCGAAAUUGCAUU-AAGUUGCCGCUUG-- ....((((((..(((((.....)))))...((--((..((((((((((.((((.........((((((.....))))))......))))..)).)))))))).)-))).))))))...-- ( -30.36, z-score = -2.26, R) >droEre2.scaffold_4845 10034702 115 - 22589142 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGCCAGAGCGAAAUUGCAUU-AAGUUGCCGCUUG-- ....((((((..(((((.....)))))...((--((..((((((((((.((((.........((((((.....))))))......))))..)).)))))))).)-))).))))))...-- ( -30.36, z-score = -2.26, R) >droAna3.scaffold_13266 10432679 115 + 19884421 GUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGCCAGAGCGAAAUUGCAUU-AAGUUGCCGCUUG-- ....((((((..(((((.....)))))...((--((..((((((((((.((((.........((((((.....))))))......))))..)).)))))))).)-))).))))))...-- ( -30.36, z-score = -2.06, R) >dp4.chr3 13009382 113 - 19779522 GUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCACCAUUUGUCACACAAAUGAAAUCUGCUGGAGCGAAAUUGCAUU-AAGUUGCCUCU---- ....(.((((..(((((.....)))))...((--((..((((((((((....(((.((....((((((.....))))))......))))).)).)))))))).)-))).)))).).---- ( -25.60, z-score = -0.47, R) >droPer1.super_2 426196 113 + 9036312 GUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCGAUUUGCAUGGCCACGCCCACCAUUUGUCACACAAAUGAAAUCUGCUGGAGCGAAAUUGCAUU-AAGUUGCCUCU---- ....(.((((..(((((.....)))))...((--((..((((((((((....(((.((....((((((.....))))))......))))).)).)))))))).)-))).)))).).---- ( -25.60, z-score = -0.47, R) >droWil1.scaffold_180701 2189361 116 - 3904529 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU--UAUUUGCAAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGGUUGAGCGAAAUUGCAUUAAAGUUGCCGGUUG-- .....(((((..(((((.....)))))..(((--((..((((((((((.((((((.......((((((.....)))))).....)))))).)).)))))))).))))).)))))....-- ( -28.40, z-score = -1.00, R) >droMoj3.scaffold_6496 21399969 120 - 26866924 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUUUAUAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGCUAGAGCGAAAUUGCAUUAAAGUUGCUAGCGCUG ....(((((...(((((.....)))))...........(((.....)))..)))))((....((((((.....))))))......((((((((..............))).))))))).. ( -26.54, z-score = -0.53, R) >droGri2.scaffold_15112 2695506 120 + 5172618 CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUUUAUAUUUGCGAUUUGCAUGGCCACGCCCCCGAUUUGUCACACAAAUGAAAUCUGCUAGAGCGAAAUUGCAUUAAAGUUGCCACCGCUG ....((((((..(((((.....)))))..(((((....((((((((((.((((..((....))(((((.....))))).......))))..)).)))))))).))))).))))))..... ( -26.60, z-score = -0.89, R) >consensus CUUUGUGGCAUAAACUUUUAAUGAGUUCUUUU__UAUUUGCGAUUUGCAUGGCCACGCCCCCCAUUUGUCACACAAAUGAAAUCUGCCAGAGCGAAAUUGCAUU_AAGUUGCCGCUUG__ ....((((((..(((((.....)))))...........((((((((((.((((.........((((((.....))))))......))))..)).)))))))).......))))))..... (-25.47 = -25.54 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:57 2011