| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,874,475 – 15,874,572 |
| Length | 97 |
| Max. P | 0.654462 |
| Location | 15,874,475 – 15,874,572 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 76.71 |
| Shannon entropy | 0.45123 |
| G+C content | 0.55050 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -14.96 |
| Energy contribution | -14.71 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15874475 97 - 21146708 UGAACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCAUUACCACCAUUACCAUCUCCAUUCC .......((((.(((......)))))))....(((((((((((((....)))))..))))))))................................. ( -28.20, z-score = -2.68, R) >droSec1.super_1 13351426 97 - 14215200 UGGACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCAGUACCACCAUUACCAUCUCCAUUCC ((((.((((((.(((......)))))))....(((((((((((((....)))))..)))))))).......................)))))).... ( -32.50, z-score = -3.05, R) >droSim1.chr2R 14521087 97 - 19596830 UGGACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCAUUACCACCAUUACCAUCUCCAUUCC ((((.((((((.(((......)))))))....(((((((((((((....)))))..)))))))).......................)))))).... ( -32.50, z-score = -3.45, R) >droYak2.chr2R 7801427 97 + 21139217 UGGACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUGUGGAAUACCCACACCCAUUACCACCAUUACCAUCUCCAUACC ((((.((((((.(((......)))))))....(((((((((((((....)))))..)))))))).......................)))))).... ( -32.50, z-score = -2.92, R) >droAna3.scaffold_13266 10422578 89 + 19884421 ---UGGCCGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUUUUCGACCUGGGA----CCCAUCCACCUCC-CCAUCUCCAUCCCCAUCCC ---(((.((((.(((......)))))))....((.((((((.((.........)))))))----)))..........-)))................ ( -22.60, z-score = 0.54, R) >dp4.chr3 13000325 88 - 19779522 ---UGGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCAUGGAAUCCUC--UUCGCCACUGCGACAGCGACUGGGGCCAGAACAAGAGCAA---- ---....((((.(((......)))))))......(((((..(((...((((--.((((..........))))..)))))))))))).......---- ( -25.00, z-score = 0.36, R) >droPer1.super_2 417144 88 + 9036312 ---UGGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCAUGGAAUCCUC--UUCGCCACUGCGACAGCGACUGGGGCCAGAACAAGAGCAA---- ---....((((.(((......)))))))......(((((..(((...((((--.((((..........))))..)))))))))))).......---- ( -25.00, z-score = 0.36, R) >consensus UG_ACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCACUACCACCAUUACCAUCUCCAUUCC .......((((.(((......)))))))...(((.((((....)))))))............................................... (-14.96 = -14.71 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:54 2011