| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,861,560 – 15,861,652 |
| Length | 92 |
| Max. P | 0.608269 |
| Location | 15,861,560 – 15,861,652 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.73 |
| Shannon entropy | 0.50571 |
| G+C content | 0.56695 |
| Mean single sequence MFE | -31.94 |
| Consensus MFE | -18.25 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15861560 92 - 21146708 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGGACAAUGGAAUC---GGA-UCUGG-------------GACCCCAAAC----GAUUGGAGCUGGGAACUCGGAGG -(((((..((.((((.....))))...))..)))))................---...-(((((-------------(..((((...----.........))))..)))))).. ( -30.30, z-score = -0.64, R) >droEre2.scaffold_4845 10012244 92 - 22589142 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGGACAAUGGAAUC---GGA-UCUGG-------------GGCCCCAAAC----GAUUGGAGCUGGGAACUCGGAGG -(((((..((.((((.....))))...))..)))))................---...-(((((-------------(..((((...----.........))))..)))))).. ( -32.30, z-score = -0.82, R) >droYak2.chr2R 7788486 92 + 21139217 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGGACAAUGGAAUC---GGA-UCAGG-------------GAGCCCAAAC----GAUUGGAGCUGGGAACUCGGAGG -(((((..((.((((.....))))...))..)))))..............((---.((-((...-------------.(((((((..----..)))).)))..))..)).)).. ( -27.70, z-score = -0.08, R) >droSim1.chr2R 14508224 92 - 19596830 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGGACAAUGGAAUC---GGA-UCUGG-------------GACCCCAAAC----GAUUGGAGCUGGGAACUCGGAGG -(((((..((.((((.....))))...))..)))))................---...-(((((-------------(..((((...----.........))))..)))))).. ( -30.30, z-score = -0.64, R) >droSec1.super_1 13338543 92 - 14215200 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGGACAAUGGAAUC---GGA-UCUGG-------------GACCCCAAAC----GAUUGGAGCUGGGAACUCGGAGG -(((((..((.((((.....))))...))..)))))................---...-(((((-------------(..((((...----.........))))..)))))).. ( -30.30, z-score = -0.64, R) >dp4.chr3 12987312 107 - 19779522 GGCCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCACCGAACAAUGCUGAAAUUGGAACUUGGACGCCG-------GACCCCAGACCCCAGUCUGGUGUUGGCAGCCUGGCGG ((((.(..((.((((.....))))...))..))))).(((..((((......))))...((.((..((((-------.((.((((((....)))))).))))))..)).))))) ( -39.40, z-score = -1.07, R) >droPer1.super_2 403114 114 + 9036312 GGCCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCACCGAACAAUGCUGAAAUUGGAACUUGGACGCCGGACCCCAGACCCCAGACCCCAGUCUGGUGUUGGCAGCCUGGCGG ((((.(..((.((((.....))))...))..))))).((((.((((......))))....)))).((((((...((((.(.((((((....)))))).)))))...)).)))). ( -43.50, z-score = -1.82, R) >droWil1.scaffold_180701 2153890 88 - 3904529 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGAGCAAUGCUA-----UUGCAAUUG-------------GAUACCA-------AAAUAGUGUUGACAGUUUGGCGG -(((((..((.((((.....))))...))..)))))(((...((((((((-----((....(((-------------(...)))-------)))))))))))...)))...... ( -30.10, z-score = -1.98, R) >droVir3.scaffold_12875 16874247 90 + 20611582 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGAACAAUGCG------AAUCACUUG-------------GAUUCUACGC----GCUUAGUGUUGAGCACUUGGCCG -(((((..((.((((.....))))...))..))))).(((.....)))(------((((.....-------------)))))..((.----(((.((((.....)))).))))) ( -33.10, z-score = -2.20, R) >droMoj3.scaffold_6496 21365662 90 - 26866924 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGAACAAUGCGA------AGCGCCUG-------------GAUCCAAUGC----GCAUAGUGCUGACAAUUUAGCCU -(((((..((.((((.....))))...))..))))).(((.....)))..------.((((.((-------------....))..))----))..((.(((((....))))))) ( -31.00, z-score = -1.58, R) >droGri2.scaffold_15112 2446241 96 - 5172618 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAACGAACAAUGCGAACAAAAAUCACUUG-------------GCUCCCUCGC----GGUUAGUGCUGAGCACUUGGCUA -(((((..((.((((.....))))...))..)))))..........((((.(((.......)))-------------......))))----(((((((((...)))).))))). ( -29.00, z-score = -0.44, R) >droAna3.scaffold_13266 10411080 93 + 19884421 -GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAAGGGACAAUGGAAUU---GGAGCUUGG-------------AACCCAAAAC----GAAUGGUGCUGGGAAUUUAGAGG -(((((..((.((((.....))))...))..)))))..(((.((((...)))---)...)))..-------------..((((..((----.....))..)))).......... ( -26.30, z-score = -0.78, R) >consensus _GGCCGUGACCAGUGACAAGCACUUUAGUUGCGGCCAGCGAACAAUGCAAUC___GGA_UCUGG_____________GACCCCAAAC____GAUUGGUGCUGGGAACUUGGAGG .(((((..((.((((.....))))...))..)))))...............................................................((((....))))... (-18.25 = -17.45 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:51 2011