| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,860,395 – 15,860,486 |
| Length | 91 |
| Max. P | 0.701774 |
| Location | 15,860,395 – 15,860,486 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.89 |
| Shannon entropy | 0.33220 |
| G+C content | 0.56061 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -17.39 |
| Energy contribution | -17.54 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15860395 91 - 21146708 CUUUAUAGCCAUGGC--UCGCUUCACGCUUUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUCCGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -23.80, z-score = -1.62, R) >droSec1.super_1 13337336 91 - 14215200 CUUUAUAGCCAUGGC--UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUCCGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -23.80, z-score = -1.45, R) >droSim1.chr2R 14507015 91 - 19596830 CUUUAUAGCCAUGGC--UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUCCGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -23.80, z-score = -1.45, R) >droYak2.chr2R 7787325 91 + 21139217 CUUUAUAGCCAUGGC--UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUCCGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -23.80, z-score = -1.45, R) >droEre2.scaffold_4845 10011048 91 - 22589142 CUUUAUAGCCAUGGC--UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUCCGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -23.80, z-score = -1.45, R) >droAna3.scaffold_13266 10410306 91 + 19884421 CUUUAUAGCCAUGGC--UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUCCGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -23.80, z-score = -1.45, R) >dp4.chr3 12986306 91 - 19779522 CUUUAUAGCCAUGGC--UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUACGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -24.20, z-score = -1.41, R) >droPer1.super_2 402103 91 + 9036312 CUUUAUAGCCAUGGC--UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUACGCUUUUGUGCCCCCG-------------------------- .......(.((((((--(.((((((((..........)))))..))).))))))).).(.(((...(((((......)))))..)))).....-------------------------- ( -24.20, z-score = -1.41, R) >droWil1.scaffold_180701 2152886 83 - 3904529 ---UGUGUCUAUGCCCGCUCCUUUACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUACGCUCUUGU--------------------------------- ---.............((.......(((((.((((....(((((.(....).).))))))))....))))).......))......--------------------------------- ( -14.94, z-score = 1.04, R) >droMoj3.scaffold_6496 21364272 109 - 26866924 CUUUCUAGCCAUGGC--UCGCUGCACGCUCUUGACCAUGUGACCAGCAAGCCGUGUCAGUCAUUUUGAGCGCCGUUACGCUCCUGUAAGCCCC------GCUCCGCCACGCCCCUAG-- ....((((.((((((--(.((((..(((..........)))..)))).)))))))...........(((((..((((((....))).)))..)------))))..........))))-- ( -29.00, z-score = -0.73, R) >droGri2.scaffold_15112 2445119 117 - 5172618 UUUUAUAGCCACGGC--UCGCUGCACGCUCUUGACCAUGUGACCAGCAAGCCGUGUCAGUCAUUUUGAGCGCCGUUACGCUUUUCUGAAUCCCCCCAGAACACCCCCCUCCCUUUGACC .......(.((((((--(.((((..(((..........)))..)))).))))))).).((((....(((((......)))))(((((........)))))..............)))). ( -32.80, z-score = -4.01, R) >droVir3.scaffold_12875 16872960 111 + 20611582 CUUUCUAGCCACGGC--UCGCUGCGCGCUCUUGACCAUGUGACCAGCAAGCCGUGUCAGUCAUUUUGAGCGCCGUUACGCUUUUGUGACCUCCCC----ACACCCCCACCCCCUUAA-- .......(.((((((--(.((((.((((..........))).))))).))))))).).(((((...(((((......)))))..)))))......----..................-- ( -33.70, z-score = -3.93, R) >consensus CUUUAUAGCCAUGGC__UCGCUUCACGCUCUUGACCAUGUGACCAGCUAGCCGUGUCAGUCAUUUUGAGCGCCGUUACGCUUUUGUGCCCCCG__________________________ .......(.((((((....(((...(((..........)))...)))..)))))).)...(((...(((((......)))))..)))................................ (-17.39 = -17.54 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:50 2011