| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,828,557 – 15,828,649 |
| Length | 92 |
| Max. P | 0.600216 |
| Location | 15,828,557 – 15,828,649 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.98 |
| Shannon entropy | 0.22407 |
| G+C content | 0.48897 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -22.01 |
| Energy contribution | -21.76 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15828557 92 - 21146708 ---------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGUGCUUGUCCC------------- ---------------..........((((((.(((..(.(((((((.....(((((((...((((...))))..)))))))....))))))).)..)))))))))..------------- ( -29.60, z-score = -3.00, R) >droSim1.chr2R 14480314 92 - 19596830 ---------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGUGCCCGUCCC------------- ---------------..........((((..........(((((((.....(((((((...((((...))))..)))))))....))))))).....))))......------------- ( -23.26, z-score = -0.63, R) >droSec1.super_1 13310680 92 - 14215200 ---------------UUUUGUCUUCGGCAAGUCAUUCAUGUGCGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGUGCCCGUCCC------------- ---------------..........(((...........(((((((((...(((((((...((((...))))..))))))))))))))))((....)))))......------------- ( -25.50, z-score = -1.20, R) >droYak2.chr2R 7757949 93 + 21139217 ---------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCACCGCCCGUCCCC------------ ---------------..........(((..(.....)..(((((((.....(((((((...((((...))))..)))))))....)))))))......))).......------------ ( -22.20, z-score = -0.83, R) >droEre2.scaffold_4845 9983381 93 - 22589142 ---------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCCCGUCUCU------------ ---------------..........(((...........(((..((((...(((((((...((((...))))..)))))))))))..)))((....))))).......------------ ( -25.60, z-score = -1.46, R) >droAna3.scaffold_13266 10384878 92 + 19884421 ---------------UUUUGUCUUCGACAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCCUGCCCC------------- ---------------.((((((...))))))........(((((((.....(((((((...((((...))))..)))))))....)))))))...(((....)))..------------- ( -25.30, z-score = -1.44, R) >dp4.chr3 12959794 94 - 19779522 ---------------CUUUGUCUCCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCCCGGCACUCCUCUCCC----------- ---------------...((((...(((..(.....)..(((..((((...(((((((...((((...))))..)))))))))))..))))))..))))..........----------- ( -23.60, z-score = -1.18, R) >droPer1.super_2 374847 94 + 9036312 ---------------CUUUGUCUCCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCCCGGCACUCCUCUCCC----------- ---------------...((((...(((..(.....)..(((..((((...(((((((...((((...))))..)))))))))))..))))))..))))..........----------- ( -23.60, z-score = -1.18, R) >droWil1.scaffold_180701 2107430 105 - 3904529 ---------------UUUUGUCUUGGGCAAGUUAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGAAUGACGGUGACAGUCACCGA ---------------..((((.....))))(((((((..(((..((((...(((((((...((((...))))..)))))))))))..)))((....)))))))))((((.....)))).. ( -36.80, z-score = -2.38, R) >droVir3.scaffold_12875 16842286 93 + 20611582 ---------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCUUGCACGU------------ ---------------.........((((((((.......(((..((((...(((((((...((((...))))..)))))))))))..)))((....)))))))).)).------------ ( -29.30, z-score = -1.78, R) >droMoj3.scaffold_6496 21323144 108 - 26866924 CUCGCUCUCUGGCGCUUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCAUGCACCU------------ ...((......(((((((((.(....)))))........(((((((.....(((((((...((((...))))..)))))))....)))))))...)))))..))....------------ ( -31.40, z-score = -0.95, R) >droGri2.scaffold_15112 2414890 93 - 5172618 ---------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCUUGCACGU------------ ---------------.........((((((((.......(((..((((...(((((((...((((...))))..)))))))))))..)))((....)))))))).)).------------ ( -29.30, z-score = -1.78, R) >consensus _______________UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCCCGUCCCU____________ ................(((((.....)))))........(((((((((...(((((((...((((...))))..))))))))))))))))((....))...................... (-22.01 = -21.76 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:49 2011