| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,822,813 – 15,822,921 |
| Length | 108 |
| Max. P | 0.600614 |
| Location | 15,822,813 – 15,822,921 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 87.93 |
| Shannon entropy | 0.21884 |
| G+C content | 0.67402 |
| Mean single sequence MFE | -48.50 |
| Consensus MFE | -39.18 |
| Energy contribution | -40.42 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15822813 108 + 21146708 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCAACGUCCGCCGUCCACAGUC (((((((.(((((..(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((...))))))).........)))))))...... ( -49.70, z-score = -1.24, R) >droSim1.chr2R 14474713 108 + 19596830 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCGACGUCCGCCGUCCUCAGUC (((((((........(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((((((........))).))))))))))...... ( -51.60, z-score = -1.37, R) >droSec1.super_1 13305001 108 + 14215200 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCGACGUCCGCCGUCCUCAGUC (((((((........(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((((((........))).))))))))))...... ( -51.60, z-score = -1.37, R) >droYak2.chr2R 7752017 105 - 21139217 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCU---GUCCGCUGUCCACCGUCCGCAGUCUUCAGUC ((((((..(((((.((((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))---)...)))))...))))))............. ( -47.10, z-score = -1.15, R) >droEre2.scaffold_4845 9977636 84 + 22589142 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCC---GUCCUCAGUC--------------------- (((((((....(((..(..(((...)))..)..)))...(((((.(((..(((....))).))))))))..)))---))))......--------------------- ( -42.50, z-score = -2.39, R) >consensus GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCAACGUCCGCCGUCCUCAGUC (((((((.(..(((((((((((((.(((.....))).))))(((.(((..(((....))).))))))..))))).))))).))))))).................... (-39.18 = -40.42 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:48 2011