| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,822,672 – 15,822,790 |
| Length | 118 |
| Max. P | 0.797884 |
| Location | 15,822,672 – 15,822,790 |
|---|---|
| Length | 118 |
| Sequences | 11 |
| Columns | 136 |
| Reading direction | forward |
| Mean pairwise identity | 69.49 |
| Shannon entropy | 0.63941 |
| G+C content | 0.57523 |
| Mean single sequence MFE | -43.40 |
| Consensus MFE | -20.86 |
| Energy contribution | -20.88 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15822672 118 + 21146708 -----------------CCACUGUGCCAAC-GAUCUUGGCGCAGUCAGCGGCGGCGGCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCCUGCGAACGGGUU -----------------((((((((((((.-....))))))))))..((((((.(((.(((((....))(((....)))....)))...........(((((((....))))))).))).)))).))....))... ( -50.60, z-score = -1.76, R) >droSim1.chr2R 14474587 103 + 19596830 -----------------CCACUGUGCCAAC-GAUCUUGGCG---------------GCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCCUGCGAACGGGUU -----------------...(((((((((.-....)))))(---------------(((((((....))(((....)))....)))...........(((((((....)))))))......))).....))))... ( -36.10, z-score = -0.72, R) >droSec1.super_1 13304875 103 + 14215200 -----------------CCACUGUGCCAAC-GAUCUUGGCG---------------GCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCCUGCGAACGGGUU -----------------...(((((((((.-....)))))(---------------(((((((....))(((....)))....)))...........(((((((....)))))))......))).....))))... ( -36.10, z-score = -0.72, R) >droYak2.chr2R 7751861 117 - 21139217 -----------------CCACUGUGCCACC-GAUCUUGGCGCAGA-GUCGGCGGCGGCGGCGCGUUAGCACUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCCUGCGAACGGGUU -----------------...((((((((..-.....)))))))).-(((((.((((((.((..((((....))))..))....)))...........(((.((....)).)))))))))))(((((....))))). ( -46.60, z-score = -1.35, R) >droEre2.scaffold_4845 9977480 117 + 22589142 -----------------CCACUGUGCCAGC-GAUCUUGGCGCAGA-GGCGACGGCGGCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCCUGCGAACGGGUU -----------------((.(((((((((.-....)))))))))(-((((.(((.((((((((....))(((....)))....)))...........(((.((....)).))))))))).)))))......))... ( -52.40, z-score = -2.28, R) >droAna3.scaffold_13266 10379079 113 - 19884421 -----------------CCAGUGUGCUUAC-GAUAUAAAGGCGCU-----GAGGCGGCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACGUUCGCGUGAGUAAUCUCGCGCCCCGGUGCACUCGAGCACUUG -----------------.(((.((((((.(-........)(((((-----(.(((((((((((....)))))...((....)))))...........(((.((....)).)))))).))))))....))))))))) ( -43.00, z-score = -1.13, R) >dp4.chr3 12954028 133 + 19779522 CCACUGUGCCA--UGCCGCAGAUCACCAAGCGAGCCCCUCGAUGCC-GGAUCGACGUCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCUCUUGGCCCGGCC ...(((((...--...))))).........((((...))))..(((-((..((((((((((((....))(((....)))....)))...........(((((((....)))))))...))))...)))..))))). ( -45.30, z-score = -1.24, R) >droPer1.super_2 369060 134 - 9036312 CCACUGUGCCA--UGCCGCAGAUCACCAAGCGAGCCCCUCGAUGCCCGGAUCGACGUCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCUCUUGGCCCGGCC .......(((.--.(((...((((......((((...)))).......))))(((((((((((....))(((....)))....)))...........(((((((....)))))))...)))).))..)))..))). ( -43.82, z-score = -0.86, R) >droVir3.scaffold_12875 16833169 127 - 20611582 CCACUGUGCAU-UAGUCUUGAAGCGGUAACCGGGCUUGAAGUCGGAACUGGAGUCAGCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCCGGUC-------- ..((((.((((-(......(((...((((...(((.(((..(((....)))..)))(((((((....))))).....))....)))...)))).)))(((((((....)))))))...))))))))).-------- ( -41.80, z-score = -0.37, R) >droMoj3.scaffold_6496 21313318 111 + 26866924 CCACUGUG-----GCGCUUGCAGCGGU-------CUUGCAGUCGGAACUGAAGUCAGCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGC------------- ......((-----(((.((((.((.(.-------(((.((((....))))))).).))(((((....))))).....)))).))))).....((((.(((((((....)))))))...)))).------------- ( -41.40, z-score = -1.29, R) >droGri2.scaffold_15112 2406506 128 + 5172618 CCACUGUGCACGUUGGCUCGAAGCGGUAACCGGGCUUGAAGUCGGAACCGGAGUCAGCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCUCCCCGAUGCAAGUC-------- ..(((.(((((((((((((....((((..((((.(.....))))).))))))))))))(((((....))(((....)))....)))...........(((.((....)).))).....).))))))).-------- ( -40.30, z-score = 0.21, R) >consensus _________________CCACUGUGCCAAC_GAUCUUGGCGCAGG__GCGGCGGCGGCGGCGCGUUAGCGCUAAUAAGCAAUUGCCAAAUUACAUUCGCGUGAGUAAUCUCGCGCCCCGAUGCCUGCGAACGGGUU ..........................................................(((((....))(((....)))....)))......((((.(((((((....)))))))...)))).............. (-20.86 = -20.88 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:47 2011