| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,819,025 – 15,819,118 |
| Length | 93 |
| Max. P | 0.597428 |
| Location | 15,819,025 – 15,819,118 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 86.62 |
| Shannon entropy | 0.25962 |
| G+C content | 0.37699 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -13.84 |
| Energy contribution | -13.35 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15819025 93 - 21146708 UAAUAUC-CGCGGAGU--------ACACAGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCUUGCGAAU-AAAGCCUCC---------- ...(((.-(((((((.--------.....(((.(((((....))))).)))(((((((((.....))))))).)).......))).)))).))-)........---------- ( -20.50, z-score = -1.31, R) >droSim1.chr2R 14470952 93 - 19596830 UAAUAUC-CGCGGAGU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCCUGCGAAU-AAAGCCUCC---------- ...(((.-(((((((.--------.....(((.(((((....))))).)))(((((((((.....))))))).)).......)))).))).))-)........---------- ( -22.50, z-score = -1.78, R) >droSec1.super_1 13301270 93 - 14215200 UAAUAUC-CGCGGAGU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCCUGCGAAU-AAAGCCUCC---------- ...(((.-(((((((.--------.....(((.(((((....))))).)))(((((((((.....))))))).)).......)))).))).))-)........---------- ( -22.50, z-score = -1.78, R) >droYak2.chr2R 7748001 93 + 21139217 UAAUAUC-CACGGAGU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCCUGCGAAU-AAAGCCUCC---------- .....((-....))..--------...(((((((((.((..(..(((.(((((.((((((.....))))))))))).)))..)..))...)))-.))))))..---------- ( -22.50, z-score = -2.18, R) >droEre2.scaffold_4845 9973866 93 - 22589142 UAAUAUC-CGCGGAGU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCCUGCGAAU-AAAGCCUGC---------- .....((-....))..--------...(((((((((.((..(..(((.(((((.((((((.....))))))))))).)))..)..))...)))-.))))))..---------- ( -23.10, z-score = -1.47, R) >droAna3.scaffold_13266 10375217 93 + 19884421 UAAUAUC-AGCGAAAU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCCUGCGAAU-AAAGCCUCC---------- .......-........--------...(((((((((.((..(..(((.(((((.((((((.....))))))))))).)))..)..))...)))-.))))))..---------- ( -22.20, z-score = -2.39, R) >dp4.chr3 12950213 94 - 19779522 UAAUAUCAGGCGAAAU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCACGUGAAU-AAAGCCUCC---------- ................--------...((((((.(((.((((..(((.(((((.((((((.....))))))))))).)))...)))).)))..-.))))))..---------- ( -26.10, z-score = -3.39, R) >droPer1.super_2 365257 94 + 9036312 UAAUAUCAGGCGAAAU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCACGUGAAU-AAAGCCUCC---------- ................--------...((((((.(((.((((..(((.(((((.((((((.....))))))))))).)))...)))).)))..-.))))))..---------- ( -26.10, z-score = -3.39, R) >droWil1.scaffold_180701 2093759 95 - 3904529 UAAUAUGAGGCGAAAU--------ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCAUGUGAAU-AAAGGCUCGA--------- .....((((.(....(--------(((..(((.(((((....))))).)))(((((((((.....))))))).))...........))))...-...).)))).--------- ( -21.00, z-score = -0.88, R) >droVir3.scaffold_12875 16828136 103 + 20611582 UAAUAUC-AGCGAAAUACUCGCGUACAAGCCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCACUCGAAU-AAAACCACCAG-------- .......-.((((.....)))).........(((((.(((((..(((.(((((.((((((.....))))))))))).)))...)))))..)))-)).........-------- ( -23.70, z-score = -3.04, R) >droMoj3.scaffold_6496 21308089 112 - 26866924 UAAUAUC-UGCGAAAUACUCGCGUACAAGCCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCACUCGAAUAAAAACCACCAAGCAGCCAG ......(-(((.........((......)).(((((.(((((..(((.(((((.((((((.....))))))))))).)))...)))))..)))))..........)))).... ( -25.40, z-score = -2.63, R) >droGri2.scaffold_15112 2402136 109 - 5172618 UAAUAUC-UGCGAAAUACUCGCGAACAAGCCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCAACCGAAU-AAAAUCACCAGUCUCUC-- .......-(((((.....)))))((((.....))))..((((((....(((((.((((((.....)))))))))))......(((....))).-..)))))).........-- ( -21.40, z-score = -1.80, R) >consensus UAAUAUC_CGCGAAAU________ACAAGGCUUGUUAAGUGAUUAAUCAGCGCCAGAUAUAAUUUGUGUCUGCGUUAAUUUUUUCAUGCGAAU_AAAGCCUCC__________ ...........((((..................(((((....))))).(((((.((((((.....))))))))))).....))))............................ (-13.84 = -13.35 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:46 2011