| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,812,660 – 15,812,750 |
| Length | 90 |
| Max. P | 0.806489 |
| Location | 15,812,660 – 15,812,750 |
|---|---|
| Length | 90 |
| Sequences | 9 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.86 |
| Shannon entropy | 0.60368 |
| G+C content | 0.48147 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -7.53 |
| Energy contribution | -7.67 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15812660 90 - 21146708 UUCCCCCUACCCGCCCACCUGCCCACCUGCAUUUUCC-CCAGCAGCGUUUAUCAGU-UUUGCAUUGCAUUUGA--GCUGAGAUUAGCGGCAGAG ..................(((((...((((.......-...)))).(((..(((((-(((((...)))...))--)))))....)))))))).. ( -21.20, z-score = -2.62, R) >droSim1.chr2R 14464350 82 - 19596830 --------UUCCCCCCACCUGCCCACCUGAAUUUUCC-CCAGCAGCGUUUAUCAGU-UUUGCAUUGCAUUUGA--GCUGAGAUUAGCGGCAGAG --------..........(((((...(((........-.)))..((.....(((((-(((((...)))...))--))))).....))))))).. ( -19.70, z-score = -2.53, R) >droSec1.super_1 13294690 82 - 14215200 --------UUCCCCCCACCUGCCCACCUGCAUUUUCC-CCACAAGCGUUUAUCAGU-UUUGCAUUGCAUUUGA--GCUGAGAUUAGCGGCAGAG --------..........(((((.....((.......-......))(((..(((((-(((((...)))...))--)))))....)))))))).. ( -17.72, z-score = -2.03, R) >droEre2.scaffold_4845 9967404 81 - 22589142 ---------UACCCCCACCUGCCCUCCUGCAUUUUCC-CCAGCAGCGUUUAUCAGU-UUUGCAUUGCAUUUGA--GCUGAGAUUAGCGGCAGAG ---------.........(((((...((((.......-...)))).(((..(((((-(((((...)))...))--)))))....)))))))).. ( -21.20, z-score = -2.59, R) >droYak2.chr2R 7741306 90 + 21139217 UUCCCCAACCGCCCCCACCUGCCCACCUGCAUUUUCC-CCAGCAGCGUUUAUCAGU-UUUGCAUUGCAUUUGA--GCUGAGAUUAGCGGCAGAA ..................(((((...((((.......-...)))).(((..(((((-(((((...)))...))--)))))....)))))))).. ( -21.20, z-score = -2.43, R) >droAna3.scaffold_13266 10368609 80 + 19884421 ---------UUCCCCAACAAUUCCCCCCAGAACUUUC-CCAGCAGCGUUUAUCAGU-UUUGCAUUGCUUUUGA--GCUGAGAUUAGCGGCAAA- ---------............................-...((.((.....(((((-((.((...))....))--))))).....)).))...- ( -13.40, z-score = -0.45, R) >droWil1.scaffold_180701 2081526 77 - 3904529 --------------CCACCUCCACCUCCAUCUCCUCCACCUCUUGUGAUUAUCAGU-UUUGCAUUGCAUUUGA--GCUGAGAUUAGCGAUGGCA --------------............(((((.....(((.....)))....(((((-(((((...)))...))--))))).......))))).. ( -14.40, z-score = -0.56, R) >droGri2.scaffold_15112 2392739 77 - 5172618 --------------UUUUGGUUUUGCUUUUGUUUUGCUCAGUCGACUUUUAUCAGCAUUUGCAUUGCAUUUGA--GCUGAGAUUAGCGAAUGG- --------------.......((((((...(((((((((((..((......)).(((.......)))..))))--)).))))).))))))...- ( -16.90, z-score = -0.35, R) >droVir3.scaffold_12875 16819534 84 + 20611582 ---------UUACUUUUUGCGUUUACUUUUGUUUUUCCCACUCGACUUUUAUCAGCAUUUGCAUUGCAUUUGAGCGCUGAGAUUAGCGCAUGG- ---------............................(((..............(((.......)))......((((((....)))))).)))- ( -12.90, z-score = 0.45, R) >consensus _________UCCCCCCACCUGCCCACCUGCAUUUUCC_CCAGCAGCGUUUAUCAGU_UUUGCAUUGCAUUUGA__GCUGAGAUUAGCGGCAGAG .........................................((.((.....(((((.....((.......))...))))).....)).)).... ( -7.53 = -7.67 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:45 2011