| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,798,959 – 15,799,069 |
| Length | 110 |
| Max. P | 0.825198 |
| Location | 15,798,959 – 15,799,069 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.99 |
| Shannon entropy | 0.48857 |
| G+C content | 0.40686 |
| Mean single sequence MFE | -28.79 |
| Consensus MFE | -17.49 |
| Energy contribution | -18.19 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15798959 110 + 21146708 UCUGCGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCUAGCGAAAUUGCUUACAGGCAAUGCGCAGGCACUAU-UAUUACUGUUUUUCA--------- ((((((((((((((((.(((((..(((....))).))))).))))))))))).........((...((((((....)))))))))))))......-...............--------- ( -31.80, z-score = -1.84, R) >droSim1.chr2R 14458042 110 + 19596830 UCUGCGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCCAGCGAAAUUGCUUACAGGCAAUGCGCAGGCACUAU-UAUUACUGUUUUUCA--------- ((((((((((((((((.(((((..(((....))).))))).))))))))))).........((...((((((....)))))))))))))......-...............--------- ( -31.80, z-score = -1.84, R) >droSec1.super_1 13288480 110 + 14215200 UCUGCGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCUAGCGAAAUUGCUUACAGGCAAUGCGCAGGCACUAU-UAUUACUGUUUUUCA--------- ((((((((((((((((.(((((..(((....))).))))).))))))))))).........((...((((((....)))))))))))))......-...............--------- ( -31.80, z-score = -1.84, R) >droYak2.chr2R 7734700 110 - 21139217 UCUGCGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCUGGCGAAAUUGCUUACAGGCAAUGCGCAGGCAGUAU-UAUUACUGUUUUUCA--------- .(((((((((((((((.(((((..(((....))).))))).))))))))))).........((...((((((....))))))))))))((((((.-...))))))......--------- ( -37.20, z-score = -3.03, R) >droEre2.scaffold_4845 9961228 110 + 22589142 CAUGCGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCUGGCGAAAUUGCUUACAGGCAAUGCGCAGGCACUGU-UAUUACUGCUUUUCA--------- ...(((((((((((((.(((((..(((....))).))))).))))))))))).....((((.((..((((((....)))))).))))))......-.......))......--------- ( -32.90, z-score = -1.20, R) >droAna3.scaffold_13266 10362341 105 - 19884421 UCUGCGGCUAACAAUAGUUGUGAGCACUCAGUCGACAUAAAUUUACUUAGCCUACUUCCCUGCGAAAUUGCUUACAGCCAUUGCCAUUUUUGGGAAUUCUUUAAC--------------- .....(((((((....)))(((((((.....(((.((.......................)))))...)))))))))))(((.(((....))).)))........--------------- ( -19.50, z-score = -0.08, R) >dp4.chr3 12936493 104 + 19779522 UCUGCGAGUAACAAAAUUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCGGGCCAAAUUGCUUACAGACAAUGCACAGGCGAUAUCCAGAGAAA---------------- ((((.((.((((((((((((((..(((....))).))))))))))))))((((......))))...(((((((.((.....))...))))))).))))))....---------------- ( -26.70, z-score = -1.45, R) >droPer1.super_2 350381 104 - 9036312 UCUGCGAGUAACAAAAUUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCGGGCCAAAUUGCUUACAGACAAUGCACAGGCGAUAUCCAGAGAAA---------------- ((((.((.((((((((((((((..(((....))).))))))))))))))((((......))))...(((((((.((.....))...))))))).))))))....---------------- ( -26.70, z-score = -1.45, R) >droWil1.scaffold_180701 2069705 90 + 3904529 -UUGUGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUUUAGGAGAAAUUGCUUAC---CAUGGCCCAUGCAAGA-------------------------- -(((((((((((((((.(((((..(((....))).))))).))))))))))).................(((...---...)))....))))..-------------------------- ( -22.10, z-score = -0.58, R) >droVir3.scaffold_12875 16810811 120 - 20611582 UUUGUGGCUGACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUUUGGCCAAAAUUGCUUACAGACAAUGCACAGGAGCAAUGCGCUAUUAUUAUCCAAUUUUUUUG ...(((((((((((((.(((((..(((....))).))))).))))))))))).))...((((....(((((((.((.....)).....)))))))..))))................... ( -28.50, z-score = -0.44, R) >droMoj3.scaffold_6496 21285221 117 + 26866924 UCUGUGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUUUGGCCAAAAUUGCUCACAGACAAUGCACAGAAGCAAUGCGCUAUUAUUAUCCAUUUCUU--- (((((((((......)))((((.((.(((....)))...(((((((...(((.......)))))))))))).)))).......))))))(((.....))).................--- ( -26.70, z-score = -0.47, R) >droGri2.scaffold_15112 2383580 117 + 5172618 AGUGUGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUUUGGCCAAAAUUGCUUACAGACAAUGCACAGAAGCAAUGCGCUAUUAUUAUCCAUCUUUU--- ((((((((((((((((.(((((..(((....))).))))).)))))))))))..((((((((....(((((.....).)))))).))))))....))))).................--- ( -29.80, z-score = -1.21, R) >consensus UCUGCGGCUAACAAAAGUUGUGCGCAGUCAGUUGACAUAAAUUUUGUUAGCCUACUUCCGGGCGAAAUUGCUUACAGACAAUGCACAGGCACUAU_UAUUACUAUUUUUCA_________ ...(((((((((((((.(((((..(((....))).))))).)))))))))))..............((((........)))))).................................... (-17.49 = -18.19 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:44 2011