| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,777,354 – 15,777,448 |
| Length | 94 |
| Max. P | 0.850832 |
| Location | 15,777,354 – 15,777,448 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 89.47 |
| Shannon entropy | 0.18705 |
| G+C content | 0.40666 |
| Mean single sequence MFE | -26.77 |
| Consensus MFE | -20.60 |
| Energy contribution | -21.13 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15777354 94 - 21146708 --UGUGUGUGUGCGCAAAUCCUUUGGCCGUUGCGUGGCAAUUAAAAGGGAUUUUCAUGGCUAAAACGUAUUUAUUUAACACACACUCACAUACCCG --.((((((((..(.(((((((((.((((.....))))......))))))))).)(((.......))).........))))))))........... ( -24.80, z-score = -1.16, R) >droYak2.chr2R 7712714 96 + 21139217 UGAGUGUGUGUGCGCAAAUCCUUUGGCCGUUGCGUGGCAAUUAAAAGGGAUUUUCAUGGCUAAAACGUAUUUAUUUAACACACACUCACACACCCG (((((((((((..(.(((((((((.((((.....))))......))))))))).)(((.......))).........)))))))))))........ ( -30.20, z-score = -2.57, R) >droEre2.scaffold_4845 9939716 96 - 22589142 CGAGUGUGUGUGCGCAAAUCCUUUGGCCGUUGCGUGGCAAUUAAAAGGGAUUUUCAUGGCUAAAACGUAUUUAUUUAGCACACACUCACAUACCCG .((((((((((..(.(((((((((.((((.....))))......))))))))).)(((.......))).........))))))))))......... ( -30.40, z-score = -2.53, R) >droAna3.scaffold_13266 10338002 93 + 19884421 ---GUGUGUGUGUGUAAAUCCUUUGGCUGUUGCGUGGCAAUUAAAAGGGAUUUUCAUGGCUAAAACGUAUUUAUUUAACACAGACACUCCCACCCA ---((((.((((((.(((((((((....(((((...)))))...))))))))).)(((.......))).........))))).))))......... ( -25.00, z-score = -1.37, R) >dp4.chr3 12905639 93 - 19779522 ---GCUUGUGUGUGUAAAUCCUUUUGCCGUUGCGUGGCAAUUAAAAGGGAUUUUCAUGACUAAAACGUAUUUAUUUAACACACACAUAUACACACA ---...(((((((((((((((((((...(((((...)))))..))))))))))...(((.((((.....)))).)))))))))))).......... ( -24.80, z-score = -2.69, R) >droPer1.super_2 318846 93 + 9036312 ---GCUUGUGUGUGUAAAUCCUUUUGCCGUUGCGUGGCAAUUAAAAGGGAUUUUCAUGACUAAAACGUAUUUAUUUAACACACACACAUACACACA ---(..(((((((((((((((((((...(((((...)))))..))))))))))...(((.((((.....)))).)))..)))))))))..)..... ( -25.40, z-score = -2.76, R) >consensus ___GUGUGUGUGCGCAAAUCCUUUGGCCGUUGCGUGGCAAUUAAAAGGGAUUUUCAUGGCUAAAACGUAUUUAUUUAACACACACACACACACCCA ...(.(((((((((.(((((((((....(((((...)))))...))))))))).)(((.......))).........)))))))).)......... (-20.60 = -21.13 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:37 2011