| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,775,444 – 15,775,589 |
| Length | 145 |
| Max. P | 0.630542 |
| Location | 15,775,444 – 15,775,589 |
|---|---|
| Length | 145 |
| Sequences | 5 |
| Columns | 145 |
| Reading direction | reverse |
| Mean pairwise identity | 90.34 |
| Shannon entropy | 0.17242 |
| G+C content | 0.44870 |
| Mean single sequence MFE | -43.02 |
| Consensus MFE | -36.24 |
| Energy contribution | -37.72 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15775444 145 - 21146708 UUUAGGGGGGUCGAAAUAUCUCAAAGAUUCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGUGUUUUUCAGAACCGUAAUGGGCACUACCCCCAAAGGGAGGUUUAAUUGGAUUGAUAUCAAACUAGCCGAAGGGCAGAA ..(((.(..(((((.............((((..(((((((((..(((.(((......)))..))))))))))))))))(((...(((((.((.(((.....))))))))))..))).)))))..)...)))(((....))).... ( -36.50, z-score = 0.09, R) >droEre2.scaffold_4845 9937841 131 - 22589142 UUUUGGGGGGUCGACAUAUCUUAAAGAUCCUUAGAGAAGCAC--------------GAGCUAUCUGUGUUUUUCAGAACCCUAAUGGGCACUGCCCACAAAGGGAGGUUUAAUUGGAUUGAUAUCCAACUAGCCGAAGGGCAGAA .....(((((((.............))))))).(((((((((--------------((....)).)))))))))....((((..(((((...)))))...))))........((((((....))))))((.(((....))))).. ( -43.72, z-score = -2.47, R) >droYak2.chr2R 7710806 145 + 21139217 UUCAGGGGGGUCGACAUAUCUUAAAGAUCCUUGGAGAAGCACGUAGCCGCUUACAGGAGCUAUCUGUGUUUUUCAGAACCCUAAUGGGCACUGCCCACAAAGGGAGGCUUAAUUGGAUUGAUAUCCAACUAGCCGAAGGGCAGAA (((..(((((((.............))))))).(((((((((((((((........).)))))..))))))))).)))(((....)))..((((((.(....)..((((...((((((....))))))..))))...)))))).. ( -49.82, z-score = -2.10, R) >droSec1.super_1 13265153 145 - 14215200 UUUAGGGGGGUCGAAAUAUAUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGUGUUUUUCAGAACCCUAAUGGGCACUACCCUCAAAGGGAGGUUUAAUUGGAUUGAUAUCAAACUAGCCAAAGGGCAACA .(((((((((((.............)))))...(((((((((..(((.(((......)))..))))))))))))....))))))..((((((.(((.....))).))).....(((.(((....))).))))))....(....). ( -41.22, z-score = -1.65, R) >droSim1.chr2R 14434639 145 - 19596830 UUUAGGGGGGUCGAAAUAUCUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGUGUUUUUCAGAACCCUAAUGGGCGCUACCCUCAAAGGGAGGUUUAAUUGGAUUGAUAUCAAACUAGCCGAAGGGCAAAA .(((((((((((.............)))))...(((((((((..(((.(((......)))..))))))))))))....))))))(((((.((.(((.....))))))))))..(((.(((....))).)))(((....))).... ( -43.82, z-score = -1.65, R) >consensus UUUAGGGGGGUCGAAAUAUCUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGUGUUUUUCAGAACCCUAAUGGGCACUACCCACAAAGGGAGGUUUAAUUGGAUUGAUAUCAAACUAGCCGAAGGGCAGAA .(((((((((((.............)))))...((((((((((.....(((......)))....))))))))))....))))))(((((.((.(((.....))))))))))..(((.(((....))).)))(((....))).... (-36.24 = -37.72 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:37 2011