| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,745,114 – 15,745,220 |
| Length | 106 |
| Max. P | 0.713757 |
| Location | 15,745,114 – 15,745,220 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.48 |
| Shannon entropy | 0.40969 |
| G+C content | 0.45013 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15745114 106 + 21146708 CAGUGUGUUUGACUUCCGUUUAGGUUUAGGUUCGCGCCCAAAGACUAUCGUUUUGGGUAUUUGCAUUUGUCUC-CUACCGAACCUGGCAUCUAUCCA--AAUAUACACU ..(((((((((((....)).((((((((((((((.((((((.(((....)))))))))....((....))...-....))))))))).)))))..))--)))))))... ( -29.80, z-score = -2.72, R) >droSim1.chr2R 14403947 106 + 19596830 CAGUGUGUUUGACUUCCGUUUAGGUUUAGGUUCGCGCCCAAAGACCAUCGUUUUGGGCAUUUGCAUUUGUCUC-CUACCGAACCUGGCAUCUAUCCA--AAUAUACACU ..(((((((((((....)).((((((((((((((.((((((((.......))))))))....((....))...-....))))))))).)))))..))--)))))))... ( -32.00, z-score = -3.23, R) >droSec1.super_1 13235146 106 + 14215200 CAGUGUGUUUGACUUCCGUUUAGGUUUAGGUUCGCGCCCAAAGACCAUCGUUUUGGGCAUUUGCAUUUGUCUC-CUACCGAACCUGGCAUCUAUCCA--AAUAUACACU ..(((((((((((....)).((((((((((((((.((((((((.......))))))))....((....))...-....))))))))).)))))..))--)))))))... ( -32.00, z-score = -3.23, R) >droYak2.chr2R 7678928 106 - 21139217 CCGUGUGUUUGACUUCCGAUUAGGCUUAGGUUCGCGCCCAAAGACCAUCGUUUCGGGCAUUUGCAUUUGUCUC-CUACCGAACCUGGCAUCUAUCC--GUAUAUACACU ..((((((...((....(((...(((.(((((((.((((..((((....)))).))))....((....))...-....))))))))))....))).--))..)))))). ( -28.20, z-score = -1.52, R) >droEre2.scaffold_4845 9907945 107 + 22589142 CCGUGUGUUUGACUUCCGAUUAGGCUUAGGUUCGCGCCCAAAGUCCAUCGUUUCGGGCAUUUGCAUUUGUCUU--UACCGAACCUGGCAUCUAUCCAUGUGUGUACACU ..(((((..(.((....(((...(((.(((((((.((((.(((.......))).))))....((....))...--...))))))))))....)))...)))..))))). ( -24.70, z-score = 0.06, R) >droAna3.scaffold_13266 10303220 91 - 19884421 --CUUCAGAGGACUUCCGUUUAG--UGGAGAUCGUGACCAAAAAAGAUCUUUCCAAGCAUUUACAUUUGUCUUUCUUUUGGGUCAUUGAUACACU-------------- --.......((....))....((--((...(((((((((..((((((.......(((((........)).))))))))).))))).)))).))))-------------- ( -18.41, z-score = -0.08, R) >consensus CAGUGUGUUUGACUUCCGUUUAGGUUUAGGUUCGCGCCCAAAGACCAUCGUUUCGGGCAUUUGCAUUUGUCUC_CUACCGAACCUGGCAUCUAUCCA__AAUAUACACU ..((((((...............((.((((((((.((((...(((....)))..))))....((....))........))))))))))..............)))))). (-14.93 = -15.77 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:35 2011