| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,744,864 – 15,744,959 |
| Length | 95 |
| Max. P | 0.925450 |
| Location | 15,744,864 – 15,744,959 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.72 |
| Shannon entropy | 0.48215 |
| G+C content | 0.47374 |
| Mean single sequence MFE | -23.66 |
| Consensus MFE | -12.87 |
| Energy contribution | -13.26 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15744864 95 - 21146708 AGACAUCCAUUUAUAAUCGCCGGCCAGCCGUGCGGACAGCCACCAUCCUCUGCACCUAUAUAUAUAU--AUAAC----------UAUAUGUGUGUGUCCAGUCAUUC .(((..............(((((....))).))((((.((...........))....((((((((((--(....----------))))))))))))))).))).... ( -24.80, z-score = -2.48, R) >droSim1.chr2R 14403690 101 - 19596830 AGACAUCCAUUUAUAAUCGCCGGCCAGCCGUGCGGACAGCCACCAUCCUCUGCACCUAUAUAUA----AAUAAC--UAUAUACGUAUAUGAGUGUGUCCAGUCAUUC .(((..............(((((....))).))(((((..((((((....(((...((((((..----......--)))))).))).))).)))))))).))).... ( -23.10, z-score = -1.75, R) >droSec1.super_1 13234897 101 - 14215200 AGACAUCCAUUUAUAAUCGCCGGCCAGCCGUGCGGACAGCCACCAUCCUCUGCACCUAUAUAUA----AAUAAC--UAUAUACGUAUAUGUGUGUGUCCAGUCAUUC .(((..............(((((....))).))(((((..((((((....(((...((((((..----......--)))))).))).))).)))))))).))).... ( -23.10, z-score = -1.56, R) >droYak2.chr2R 7678657 107 + 21139217 AGACAUCCAUUUAUAAUCGCCGGCCAGCCGUGCGGACAGCCACCAUCCUCUGCACCUACAUAUAUAUAAAUAACUAUAUAUAUGUAUAUGUGUGUGUCCAGUCAUUU .(((..............(((((....))).))(((((..(((........(((..((((((((((((......))))))))))))..))))))))))).))).... ( -31.70, z-score = -3.97, R) >droEre2.scaffold_4845 9907702 91 - 22589142 AGACAUCCAUUUAUAAUCGCCGGCCAGCCGUGCGGACAGCCACCAUCCUCUGCACCUAUAUAUA----AAUAAC------------UAUGUGUAUGUCCAGUCGUUU .(((..............(((((....))).))(((((((...........))...((((((((----......------------))))))))))))).))).... ( -22.50, z-score = -2.34, R) >droAna3.scaffold_13266 10302978 79 + 19884421 AGGCAUCCAUUUAUAAUCGCCGACCAGCCGUGCGGACAGCCAUCAUCC---GUAUAUACGUGUA----------------------UAUGUGUGUGUCCAGUCC--- .(((..............((((......)).))(((((.....((..(---((((((....)))----------------------))))..))))))).))).--- ( -18.60, z-score = -0.35, R) >droWil1.scaffold_180701 1970824 91 - 3904529 AGACGUCCAUUUAUAAUCGUCGUCCAGCCGUGCGGACAGGCCGCACUCUACGCA-AUGUCCGUCGCCAUCCUACC-----------UACCCAUGGACCCGACC---- .((((............))))(((((...((((((.....)))))).....((.-((....)).)).........-----------......)))))......---- ( -21.80, z-score = -0.45, R) >consensus AGACAUCCAUUUAUAAUCGCCGGCCAGCCGUGCGGACAGCCACCAUCCUCUGCACCUAUAUAUA____AAUAAC__________UAUAUGUGUGUGUCCAGUCAUUC .(((..............(((((....))).))(((((((...........))...((((((((......................))))))))))))).))).... (-12.87 = -13.26 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:34 2011