Locus 4815

Sequence ID dm3.chr2R
Location 15,736,576 – 15,736,687
Length 111
Max. P 0.811760
window6616

overview

Window 6

Location 15,736,576 – 15,736,687
Length 111
Sequences 11
Columns 119
Reading direction reverse
Mean pairwise identity 86.27
Shannon entropy 0.27758
G+C content 0.43380
Mean single sequence MFE -32.34
Consensus MFE -20.36
Energy contribution -20.52
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.25
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.77
SVM RNA-class probability 0.811760
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15736576 111 - 21146708
UUGGGCCCUUGGCCAACAGCGCCGCUUCUUUUUAAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCCA--------
...(((.....(((.((.(((..(((.((((((....)))))).)))....))).........((((((((.((((.....)))).))))))))..)).))).....))).-------- ( -31.30, z-score =  -1.45, R)
>droSim1.chr2R 14395349 111 - 19596830
UUGGGCCCUUGGCCAACAGCGCCGCUUCUUUUUAAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCUA--------
...(((.....(((.((.(((..(((.((((((....)))))).)))....))).........((((((((.((((.....)))).))))))))..)).))).....))).-------- ( -29.00, z-score =  -0.77, R)
>droSec1.super_1 13226563 111 - 14215200
UUGGGCCCUUGGCCAACAGCGCCGCUUCUUUUUAAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCCA--------
...(((.....(((.((.(((..(((.((((((....)))))).)))....))).........((((((((.((((.....)))).))))))))..)).))).....))).-------- ( -31.30, z-score =  -1.45, R)
>droYak2.chr2R 7670005 111 + 21139217
UUGGGCCCUUGGCCAACAGCGCCGCUUCUUUUUAAAUAAAGAGCAGCCAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCCA--------
...(((.....(((.((.(((..(((.((((((....)))))).)))....))).........((((((((.((((.....)))).))))))))..)).))).....))).-------- ( -31.30, z-score =  -1.40, R)
>droEre2.scaffold_4845 9899341 111 - 22589142
UUGGGCCCUUGGCCAACAGCGCCGCUUCUUUUUAAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCCA--------
...(((.....(((.((.(((..(((.((((((....)))))).)))....))).........((((((((.((((.....)))).))))))))..)).))).....))).-------- ( -31.30, z-score =  -1.45, R)
>droAna3.scaffold_13266 10293010 111 + 19884421
CUGGGCCCUUGGCCAACUGCGCUGCUUCUUUUUAAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCCA--------
...(((.....(((.(((((((((((.((((......)))))))))).................(((((((.((((.....)))).)))))))))))).))).....))).-------- ( -40.50, z-score =  -4.19, R)
>dp4.chr3 12863675 118 - 19779522
CUGGGCCCUUGGCCAACUUGGCUGCUUCUUUUUAAAUAAAGAGCAGCAGAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAG-UCGACAGUCCGACA
...((((...))))......((((((.((((......))))))))))................((((((((.((((.....)))).))))))))..((((((..-......).))))). ( -35.80, z-score =  -2.05, R)
>droPer1.super_2 275762 118 + 9036312
CUGGGCCCUUGGCCAACUUGGCUGCUUCUUUUUAAAUAAAGAGCAGCAGAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAG-UCGACAGUCCGACA
...((((...))))......((((((.((((......))))))))))................((((((((.((((.....)))).))))))))..((((((..-......).))))). ( -35.80, z-score =  -2.05, R)
>droVir3.scaffold_12875 16714217 88 + 20611582
-----------------------GCUGCUUUUUAAGUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGACA--------
-----------------------((((((((((....))))))))))................((((((((.((((.....)))).))))))))..(((((....))))).-------- ( -27.80, z-score =  -3.69, R)
>droMoj3.scaffold_6496 21165487 106 - 26866924
UCGGUCCCUUUGCUG-------CGCUGCUUUUUAAGUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGACAGG------
...(((...((((((-------(((((((((((....))))))))))................((((((((.((((.....)))).))))))))..).))))))...)))...------ ( -33.90, z-score =  -2.99, R)
>droGri2.scaffold_15112 2298427 89 - 5172618
----------------------CGCUGCUUUUUAAGUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCCA--------
----------------------.((((((((((....))))))))))................((((((((.((((.....)))).)))))))).....(((.....))).-------- ( -27.70, z-score =  -3.25, R)
>consensus
UUGGGCCCUUGGCCAACAGCGCCGCUUCUUUUUAAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUUCGCCA________
...(((.....))).........(((.((((((....)))))).))).....((.........((((((((.((((.....)))).))))))))......))................. (-20.36 = -20.52 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:32 2011