| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,734,666 – 15,734,740 |
| Length | 74 |
| Max. P | 0.949969 |
| Location | 15,734,666 – 15,734,740 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 59.59 |
| Shannon entropy | 0.64583 |
| G+C content | 0.35907 |
| Mean single sequence MFE | -14.65 |
| Consensus MFE | -7.32 |
| Energy contribution | -8.20 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.949969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15734666 74 - 21146708 ACACAAUUAAUCGUUUUAAUUUUU--CCAAUGGUUGAACAUUUAUCAUCUGUGAUGAGUGCUGAUUGCGUAUUUUC ((.((((((.....(((((((...--.....)))))))(((((((((....))))))))).)))))).))...... ( -14.30, z-score = -1.35, R) >droSim1.chr2R 14393504 74 - 19596830 ACAAAAUUAAUCGUUUCAAUCUUU--CCAAUGUUUGAGCAUUUAUCAUCUGUGAUGAGUGCUGAUUGCGUAUUUUC ........................--...((((.(.(((((((((((....))))))))))).)..))))...... ( -16.00, z-score = -2.12, R) >droSec1.super_1 13224637 65 - 14215200 ---------ACAAAAUUAAUCUUU--CUAAUGUCUGAGCAUUCAUCAUCUGUGAUGAGUGCUGAUUGCGUAUUUUC ---------...............--...((((.(.(((((((((((....))))))))))).)..))))...... ( -17.20, z-score = -3.11, R) >droGri2.scaffold_15112 2295719 67 - 5172618 -------UGAGAGAGGGAGUCUUUGGUGCACGUGUGGCGCUUGAAUUUGACUAAUUAGAAAAGCAGUCGGAGUU-- -------..(((((.....)))))(((((.......)))))....(((((((..((....))..)))))))...-- ( -11.10, z-score = 1.19, R) >consensus _______UAAUAGAUUUAAUCUUU__CCAAUGUUUGAGCAUUUAUCAUCUGUGAUGAGUGCUGAUUGCGUAUUUUC ....................................(((((((((((....))))))))))).............. ( -7.32 = -8.20 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:31 2011