| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,730,525 – 15,730,638 |
| Length | 113 |
| Max. P | 0.866235 |
| Location | 15,730,525 – 15,730,638 |
|---|---|
| Length | 113 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Shannon entropy | 0.10977 |
| G+C content | 0.37442 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -20.65 |
| Energy contribution | -20.82 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15730525 113 - 21146708 -------GCAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACCAA -------...((....................((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....)))))).)).. ( -24.20, z-score = -2.26, R) >droEre2.scaffold_4845 9892570 113 - 22589142 -------GCAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACCAA -------...((....................((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....)))))).)).. ( -24.20, z-score = -2.26, R) >droYak2.chr2R 7663864 113 + 21139217 -------GCAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACCAA -------...((....................((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....)))))).)).. ( -24.20, z-score = -2.26, R) >droSec1.super_1 13220549 113 - 14215200 -------GCAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACCAA -------...((....................((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....)))))).)).. ( -24.20, z-score = -2.26, R) >droSim1.chr2R 14389405 113 - 19596830 -------GCAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACCAA -------...((....................((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....)))))).)).. ( -24.20, z-score = -2.26, R) >dp4.chr3 12858299 113 - 19779522 -------GAAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAACCCAAUUGUUGGAAAAAGCACAACGAA -------(((......)))...((........((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....))))))..)). ( -23.10, z-score = -1.97, R) >droPer1.super_2 270430 113 + 9036312 -------GAAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAACCCAAUUGUUGGAAAAAGCACAACGAA -------(((......)))...((........((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....))))))..)). ( -23.10, z-score = -1.97, R) >droAna3.scaffold_13266 10287443 113 + 19884421 -------GAAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACCAA -------...((....................((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....)))))).)).. ( -24.20, z-score = -2.55, R) >droWil1.scaffold_180701 1937687 113 - 3904529 -------GAAAGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACGAA -------.........(((.............((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....))))))..))) ( -22.50, z-score = -2.28, R) >droGri2.scaffold_15112 2289219 118 - 5172618 --CAGCAGGGAGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGGAAAAGGACAACCGA --..((((.(((....................((((.(((((((((...))))))))).))))((.......)).)))..))))..(((.....(((.....)))....)))........ ( -25.40, z-score = -1.13, R) >droMoj3.scaffold_6496 21154933 120 - 26866924 CCCUGCUGCCAGAAAAUUCAAAUCAGAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUAGGAAAAGCACAACCGA ..(((....)))....................((((.(((((((((...))))))))).))))........((((((.(.....).(((((..........)))))...))))))..... ( -22.40, z-score = -1.15, R) >droVir3.scaffold_12875 16706509 109 + 20611582 -----------GAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGGAAAAGCACAACCGA -----------.....................((((.(((((((((...))))))))).))))........((((((....(.(((.(............).))).)..))))))..... ( -21.70, z-score = -1.75, R) >consensus _______GCAGGAAAAUUCAAAUCACAAACUCGGUAUUUAUUUGCGAAGCGUAAAUGAUUACCACUUAAAAUGUGCUCGACUGCCACCUAAAAACCAAUUGUUGGAAAAAGCACAACCAA ................................((((.(((((((((...))))))))).))))........((((((......(((.(............).)))....))))))..... (-20.65 = -20.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:30 2011