| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,721,393 – 15,721,452 |
| Length | 59 |
| Max. P | 0.784339 |
| Location | 15,721,393 – 15,721,452 |
|---|---|
| Length | 59 |
| Sequences | 11 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 84.71 |
| Shannon entropy | 0.32337 |
| G+C content | 0.31491 |
| Mean single sequence MFE | -10.27 |
| Consensus MFE | -8.34 |
| Energy contribution | -8.55 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15721393 59 + 21146708 UUUUGGAAAAUUUCAUUUAACAAUUU-CCUAAUUGUUUGCAGAUACGCAUCUGCUGUCGA----- ..................(((((((.-...))))))).((((((....))))))......----- ( -10.10, z-score = -1.32, R) >droSec1.super_1 13211579 59 + 14215200 UUUUGGAAAAUUUCAUUUAACAAUUU-CCUAAUUGUUUGCAGAUACGCAUCUGCUGUCGA----- ..................(((((((.-...))))))).((((((....))))))......----- ( -10.10, z-score = -1.32, R) >droYak2.chr2R 7654520 59 - 21139217 UUUUGGAAAAUUUCAUUUAACAAUUU-CCUAAUUGUUUGCAGAUACGCAUCUGCUGUCGA----- ..................(((((((.-...))))))).((((((....))))))......----- ( -10.10, z-score = -1.32, R) >droEre2.scaffold_4845 9883539 59 + 22589142 UUUUGGAAAAUUUCAUUUAACAAUUU-CCUAAUUGUUUGCAGAUACGCAUCUGCUGUCGA----- ..................(((((((.-...))))))).((((((....))))))......----- ( -10.10, z-score = -1.32, R) >droAna3.scaffold_13266 10277977 57 - 19884421 UUUUGGGAAAUUUCAUUUAACAAUUU-CUUAAUUGUUUGCAGAUACGCAUCUGUUGGC------- ..((((((((((.........)))))-)))))..((..((((((....))))))..))------- ( -11.20, z-score = -1.96, R) >dp4.chr3 12847897 59 + 19779522 UUUUUAGAAAUUUCAUUUAACAAUUU-CUUAAUUGUUUGCAGAUACGCAUCUG---GCGUUCA-- ..................(((((((.-...)))))))....((.((((.....---)))))).-- ( -8.30, z-score = -1.02, R) >droPer1.super_2 260084 59 - 9036312 UUUUUAGAAAUUUCAUUUAACAAUUU-CUUAAUUGUUUGCAGAUACGCAUCUG---GCGUUCA-- ..................(((((((.-...)))))))....((.((((.....---)))))).-- ( -8.30, z-score = -1.02, R) >droWil1.scaffold_180701 1916335 59 + 3904529 UUUUCGGAAAUUUCAUUUAACAAUUU-CUUAAUUGUUUGCAGAUACGCAUCUGCUGUUGC----- ..................(((((((.-...))))))).((((((....))))))......----- ( -10.10, z-score = -1.28, R) >droVir3.scaffold_12875 16692290 60 - 20611582 UUUUCGUAAAUUUCAUUUAAGAAUU---UUAAUUGUUUGCAGAUACGCAUCUGCUGGCGUUGA-- ......((((.(((......))).)---)))...((..((((((....))))))..)).....-- ( -11.60, z-score = -1.14, R) >droMoj3.scaffold_6496 21136553 65 + 26866924 UUUACGUAAAAUUCAUUUAACAAUUUUCUUAAUUGUUUGCAGAUACGCAUCUGCGGCUCAGUUGU .............................((((((.((((((((....))))))))..)))))). ( -11.90, z-score = -1.58, R) >droGri2.scaffold_15112 2274804 59 + 5172618 UUUCGAAAAAAUUCGUUUAACAAUUU-CUUAAUUGUUUGCAGAUACGCAUCUGCUGUUGC----- ...((((....))))...(((((((.-...))))))).((((((....))))))......----- ( -11.20, z-score = -1.55, R) >consensus UUUUGGAAAAUUUCAUUUAACAAUUU_CUUAAUUGUUUGCAGAUACGCAUCUGCUGUCGA_____ ..................(((((((.....))))))).((((((....))))))........... ( -8.34 = -8.55 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:28 2011