| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,719,939 – 15,720,036 |
| Length | 97 |
| Max. P | 0.618755 |
| Location | 15,719,939 – 15,720,036 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 97.25 |
| Shannon entropy | 0.03787 |
| G+C content | 0.27680 |
| Mean single sequence MFE | -18.07 |
| Consensus MFE | -17.73 |
| Energy contribution | -17.73 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15719939 97 + 21146708 AAACUACUGAUAUUAAAGAACUACUAUGUAUGAGGUAUACUUUAUAUAUAUCUACAUAUAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAU ................(((.....(((((((((((....)))))))))))......((((((..((((....))))..))))))))).......... ( -18.50, z-score = -0.87, R) >droSim1.chr2R 14378952 97 + 19596830 AAACUACUGAUAUUAAAGAACUACUAUGUAUGAGGUAUACUUUAUAUAUAUCUACAUAAAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAU ................(((.....(((((((((((....)))))))))))..........(((((((.(....)...)))))))))).......... ( -18.00, z-score = -1.11, R) >droEre2.scaffold_4845 9882035 95 + 22589142 AAACUACUGAUAUUAAAGAACUACUAUGUAUGAGGAAUACUUUAUAUAUAU--ACAUAUAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAU ................(((.....(((((((((((....))))))))))).--...((((((..((((....))))..))))))))).......... ( -17.70, z-score = -1.18, R) >consensus AAACUACUGAUAUUAAAGAACUACUAUGUAUGAGGUAUACUUUAUAUAUAUCUACAUAUAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAU ................(((.....(((((((((((....)))))))))))..........(((((((.(....)...)))))))))).......... (-17.73 = -17.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:27 2011