| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,368,731 – 3,368,821 |
| Length | 90 |
| Max. P | 0.913195 |
| Location | 3,368,731 – 3,368,821 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 64.94 |
| Shannon entropy | 0.45457 |
| G+C content | 0.42063 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -13.78 |
| Energy contribution | -13.57 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3368731 90 - 23011544 --------------------GGCAAGUGGUUUAUAGCUUCGAUAUUCCAUUGGUUUUCCUAGAAACGGAAAAUAGGAAUACCAUGUAACUAAGGCCACUGCCUACCAUUG --------------------((((.(((((((.(((...((.((((((....(((((((.......))))))).))))))...))...))))))))))))))........ ( -27.40, z-score = -3.15, R) >droYak2.chr2L 3353526 106 - 22324452 UGCAAGUGGCCCAUAACUGCGGC-UGUAGCAAAACACUUUGAAAUCCCAUUGAG-UUCUUAGAAACGAACAAUAAGAAUACAAUGUAACUGAGGCACUU--UUACUGCUA (((..(..(((((....)).)))-..).)))................(((((.(-((((((...........))))))).))))).......((((...--....)))). ( -20.60, z-score = -0.22, R) >droSim1.chr2L 3306930 88 - 22036055 --------------------GGCAAGUGGUUUAUAGCCUCGAUAUCCCAUUGGGUUUCCUAGAAACGAACAAUAGGAAUACAAUGUAACUGAGGCCGUU--CUACCAGCG --------------------.((..((((...(..((((((......(((((...((((((...........))))))..)))))....))))))..).--))))..)). ( -25.60, z-score = -2.22, R) >consensus ____________________GGCAAGUGGUUUAUAGCUUCGAUAUCCCAUUGGGUUUCCUAGAAACGAACAAUAGGAAUACAAUGUAACUGAGGCCAUU__CUACCACUG .........................((((......((((((......(((((...((((((...........))))))..)))))....))))))......))))..... (-13.78 = -13.57 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:40 2011