| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,718,263 – 15,718,364 |
| Length | 101 |
| Max. P | 0.561789 |
| Location | 15,718,263 – 15,718,364 |
|---|---|
| Length | 101 |
| Sequences | 9 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 70.36 |
| Shannon entropy | 0.56936 |
| G+C content | 0.62773 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.49 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15718263 101 + 21146708 UGCUGUUCCACAAGUUGUACCAGUAAAUGCCUCUGUUCCCGCGGAACAGAACUACUCC-ACGGCCACCACGGCUACGCCCAGUCCAAGGCCACAGAGAAGAG (((((...((.....))...)))))......((((((((...)))))))).((.(((.-..((((.....((((......))))...))))...))).)).. ( -25.60, z-score = -0.51, R) >droSim1.chr2R 14377281 101 + 19596830 UGCUGUUCCACAAGUUGUACCAGUAAAUGCCUCUGUUCCCGCGGAACAGAACUACUCA-ACGGCCACCACGGCCACGCCCAGCCCCAGGCCACAGAGAAGAG (((((...((.....))...)))))......((((((((...)))))))).((.(((.-..((((.....))))..(((........)))....))).)).. ( -28.30, z-score = -1.52, R) >droSec1.super_1 13208471 101 + 14215200 UGCUGUUCCACAAGUUGUACCAGUAAAUGCCUCUGUUCCCGCGGAACAGAACUACUCA-ACGGCCACCACGGCCACGCCCAGCCCCAGGCCACAGAGAAGAG (((((...((.....))...)))))......((((((((...)))))))).((.(((.-..((((.....))))..(((........)))....))).)).. ( -28.30, z-score = -1.52, R) >droYak2.chr2R 7651324 101 - 21139217 UGCUGUUCCACAAGCUGUACCAGUGAAUGCCUCUGUUCCCGCGGAACAGAACUACUCC-ACGGCCACCACGGCCACACCCAGUCCUAGGCCGCAGCGAAGAG .(((((.((....((((.....(((......((((((((...)))))))).......)-))((((.....)))).....))))....))..)))))...... ( -31.92, z-score = -1.66, R) >droEre2.scaffold_4845 9880343 101 + 22589142 UGCUGUUCCACAAGUUGUGCCAGUGAAUGCCUCUGUUCCCGCGGAACAGAACUACUCC-ACGGCCACCACGGCCACGCCCAGUCCCAGACCGCAGAGAAGAG .((((...(((.....))).)))).......((((((((...)))))))).((.(((.-..((((.....))))..((...(((...))).)).))).)).. ( -28.00, z-score = -0.65, R) >dp4.chr3 12844394 77 + 19779522 ------------------------CGCCACCACAGCUCCAGCCGAGCAGAACUAUUCC-ACGGCGACCACUGCCACCCCCAGUCCCAGGCCCCAGCGACGCG ------------------------.(((......((((.....))))...........-..((((.....)))).............)))............ ( -15.20, z-score = -0.41, R) >droPer1.super_2 256547 78 - 9036312 ------------------------CGCCGCCACAGCUCCAGCCGAGCAGAACUAUUCCCACGGCGACCACUGCCACCCCCAGUCCCAGGCCCCAGCGACGCG ------------------------(((.(((...((((.....))))..............((((.....)))).............)))....)))..... ( -17.70, z-score = -0.79, R) >droWil1.scaffold_180701 1909863 83 + 3904529 ------------------UGCUGCUGCUGCAGCUGCUGCCGUAGAGCAAAAUUACUCC-ACGGCCACCACAGCCACACCCAGCCCCAGGCCACAGCGACGUG ------------------.(((((....)))))(((((((((.(((........))).-))))).......(((.............)))...))))..... ( -25.22, z-score = -0.35, R) >droVir3.scaffold_12875 16686039 86 - 20611582 ---------------CGUGGCUGCUGCUACUGCUGCCGUGGCUGAGCAAAAUUAUUCC-ACGGCUACGACGGCCACGCCCAGUCCCAGACCGCAGCGACGCG ---------------((((..((((((..(((..(((((((.(((......)))..))-)))))...((((((...)))..))).)))...)))))).)))) ( -32.10, z-score = -1.00, R) >consensus UGCUGUUCCACAAG_UGUACCAGUAAAUGCCUCUGUUCCCGCGGAACAGAACUACUCC_ACGGCCACCACGGCCACGCCCAGUCCCAGGCCACAGCGAAGAG ............................(((.((((((.....))))))............((((.....)))).............)))............ (-13.08 = -13.49 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:26 2011