| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,692,244 – 15,692,327 |
| Length | 83 |
| Max. P | 0.518879 |
| Location | 15,692,244 – 15,692,327 |
|---|---|
| Length | 83 |
| Sequences | 7 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 74.21 |
| Shannon entropy | 0.52890 |
| G+C content | 0.41851 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -7.48 |
| Energy contribution | -8.79 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15692244 83 - 21146708 UACAGAGUUUUCAGAGCCUCACCAUUAUUAAUCUCACCGUUGAUUGAUGCUUGAGCCCAGGGUCGUAGCCC-GUUCAAUUUCUC ....(((......((((((((....((((((((........))))))))..))))....((((....))))-)))).....))) ( -18.00, z-score = -1.34, R) >droSim1.chr2R 14350972 83 - 19596830 UACAGAGUUUUCUGAGCCUCACCAUUAUUAAUCUUACCGUUGAUUGAUGCUUGAGCCCAGGGUCGUAGCCC-GUUCAAUUUCUC ....(((.....(((((((((....((((((((........))))))))..))))....((((....))))-)))))....))) ( -19.60, z-score = -1.88, R) >droSec1.super_1 13182546 83 - 14215200 UACAGAGCUUUCUGAGCCUCACCAUUAUUAAUCUUACCGUUGAUUGAUGCUUGAGCCCAGGGUCGUAGCCC-GUUCAAUUUCUC ....((((....((.((.(((....((((((((........))))))))..))))).))((((....))))-))))........ ( -19.10, z-score = -1.43, R) >droYak2.chr2R 7624556 83 + 21139217 UACAGAGUUUCCUGAGCCGCACCAUUAUUAAUCUUACCGUUGAUUGAUGCUUGAGCCCAGGGUCGUAGCCC-GUUCAAUUUCUC ....(((.....(((((.((..((.((((((((........))))))))..)).))...((((....))))-)))))....))) ( -18.30, z-score = -1.22, R) >droEre2.scaffold_4845 9854479 80 - 22589142 UACAGAGUUUU--GAGCCUCAACAUUAUUAAUCUUA-CGUUGAUUGAUGCUUGAGCCCAGGGUCGUAGCCC-GUUCAAUUUAGC .........((--(((((((((...((((((((...-....)))))))).)))))....((((....))))-))))))...... ( -19.90, z-score = -2.04, R) >droAna3.scaffold_13266 10249771 84 + 19884421 UUAAAAGUUUUUUGAACUUUUUCAUUAUUAAUCUGGCCGCUGAUUGAUGCUUCAGCCCAGGGUCGAAUCCCUGUUCAAUUUCUC ...........((((((.................((..(((((........)))))))((((......))))))))))...... ( -18.40, z-score = -1.71, R) >dp4.chr3 12817086 65 - 19779522 GAUGGAGUUUCCUAGAACUUUUAAUGCAUAAU--AAUUAUU-UUCGAAAGUUGGAACUUUCCUCUUAU---------------- ((.((((.((((...((((((..(...(((..--...))).-.)..))))))))))..))))))....---------------- ( -9.90, z-score = -0.65, R) >consensus UACAGAGUUUUCUGAGCCUCACCAUUAUUAAUCUUACCGUUGAUUGAUGCUUGAGCCCAGGGUCGUAGCCC_GUUCAAUUUCUC ....((((((...))).))).....((((((((........)))))))).((((((...(((......))).))))))...... ( -7.48 = -8.79 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:20 2011