| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,692,051 – 15,692,160 |
| Length | 109 |
| Max. P | 0.898497 |
| Location | 15,692,051 – 15,692,160 |
|---|---|
| Length | 109 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.24 |
| Shannon entropy | 0.40075 |
| G+C content | 0.47576 |
| Mean single sequence MFE | -18.44 |
| Consensus MFE | -16.23 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15692051 109 + 21146708 CCCAACCCCAUCCGAAUACC-CAACCUCCUUUCG-UGUCCAUGAGCGUUGUCAUUAGCGCUGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUU-GC .............((.....-...........((-.((.((((((((.(((.....))).)))))))).)))).((..((((......))))..)).)).(((.....)-)) ( -19.80, z-score = -1.76, R) >droSim1.chr2R 14350775 109 + 19596830 CCCAACCCCAUCCGAAUACC-CAACCUCCUUUCG-UGUCCAUGAGCGUUGUCAUUAGCGCUGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUU-GC .............((.....-...........((-.((.((((((((.(((.....))).)))))))).)))).((..((((......))))..)).)).(((.....)-)) ( -19.80, z-score = -1.76, R) >droSec1.super_1 13182349 109 + 14215200 CCCAACCCCAUCCGAAUACC-CAACCUCCCUUCG-UGUCCAUGAGCGUUGUCAUUAGCGCUGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUU-GC .............((.....-...........((-.((.((((((((.(((.....))).)))))))).)))).((..((((......))))..)).)).(((.....)-)) ( -19.80, z-score = -1.79, R) >droYak2.chr2R 7624358 110 - 21139217 CCCAACCCCAUCCGAAUACC-CAACCUCCUUUUGGUGUCCAUGAGCGUUGUCAUUAGCGCUGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUU-GC .............((.....-............((((..((((((((.(((.....))).))))))))))))..((..((((......))))..)).)).(((.....)-)) ( -21.90, z-score = -1.69, R) >droEre2.scaffold_4845 9854282 109 + 22589142 CCCAACCCCAUCCGAAUACC-CAACCUCCUUCCG-AGUCCAUGAGCGUUGUCAUUAGCGCUGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUA-GC ....................-...........((-(((.....(((((((....))))))))))))(((...((.(..((((......))))..)))...)))......-.. ( -19.30, z-score = -1.54, R) >droAna3.scaffold_13266 10249570 100 - 19884421 -----------CCGAAGCCCACCUCCUCCUUUUG-UGUCCAUGAGCGUUGUCAUUAGCGCUGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUUUGC -----------...(((((..............(-.((.((((((((.(((.....))).)))))))).)))((((........))))..))))).....(((......))) ( -18.90, z-score = -0.90, R) >droVir3.scaffold_12875 16648917 85 - 20611582 ------------------------CAUUCAGGCCAUCCUCGCAGGCAUUGUCAUUAGCGUUGCUCGUGCUCUGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUG--- ------------------------.....(((....))).((..(((.(((.....))).)))..))(((..((.(..((((......))))..)))..))).......--- ( -14.20, z-score = -0.19, R) >droMoj3.scaffold_6496 21089799 92 + 26866924 -----------------UUCAUUCCAUUCGGGCCAUCCUCGCAGGCAUUGUCAUUAGCGUAGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUU--- -----------------...........(((((......(((.(((...)))....)))..)))))(((...((.(..((((......))))..)))...)))......--- ( -13.80, z-score = 0.56, R) >consensus CCCAACCCCAUCCGAAUACC_CAACCUCCUUUCG_UGUCCAUGAGCGUUGUCAUUAGCGCUGCUCGUGCGCCGUUAUCCCUUUUUAAUAAGGUUUACUCAGCAUUUUUU_GC .......................................((((((((.(((.....))).)))))))).((.(.((..((((......))))..))..).)).......... (-16.23 = -16.07 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:19 2011