| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,682,462 – 15,682,590 |
| Length | 128 |
| Max. P | 0.521261 |
| Location | 15,682,462 – 15,682,590 |
|---|---|
| Length | 128 |
| Sequences | 9 |
| Columns | 140 |
| Reading direction | forward |
| Mean pairwise identity | 66.41 |
| Shannon entropy | 0.66675 |
| G+C content | 0.57081 |
| Mean single sequence MFE | -49.28 |
| Consensus MFE | -15.72 |
| Energy contribution | -16.04 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15682462 128 + 21146708 GCCCAGUUUCCACA--GCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCCUU----GGUGGGAGCACACUGACGAA-AGGGGUUGUGCGCGAUCUGGGUGAGUGAUGU ((((((.((((((.--.....(((.(((((((((((((((((...)))))))))))..-----(......)....)))))).))----)))))))(((((((..(...-.).)).))))).....))))))......... ( -52.20, z-score = -1.46, R) >droSim1.chr2R 14340407 128 + 19596830 GCCCAGUUUCCACA--GCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCCUU----GGUGGGAGCACACUGACGAA-AGGGGUUGUGCGCGAUCUGGGUGAGUGAUGU ((((((.((((((.--.....(((.(((((((((((((((((...)))))))))))..-----(......)....)))))).))----)))))))(((((((..(...-.).)).))))).....))))))......... ( -52.20, z-score = -1.46, R) >droSec1.super_1 13172554 128 + 14215200 GCCCAGUUUCCACA--GCGCUCAAAGAUGCCGCGCGUGUGUUAUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCCUU----GGUGGGAGCACACUGACGAA-AGGGGUUGUGCGCGAUCUGGGUGAGUGAUGU ((((((.((((((.--.....(((.(((((((((((((((((...)))))))))))..-----(......)....)))))).))----)))))))(((((((..(...-.).)).))))).....))))))......... ( -52.20, z-score = -1.58, R) >droYak2.chr2R 7614173 129 - 21139217 GCACAGUUUCCACA--GCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCUUUGCA-GGUGGGAGCACACCGACGAA-AGGGGUUGUGCG--AUCUGGGUGAGUGAUGU .(((.((((((((.--.....(((((((((((((((((((((...)))))))))))..-----(......)....))))))))))..-.)))))))).((((..(...-.)(((((....)--)))).)))).))).... ( -55.70, z-score = -2.85, R) >droEre2.scaffold_4845 9844355 125 + 22589142 GCCCAGUUUCCACA--GCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAAAA-GGGGGUGGCGUCCUU----GGUGGGAGCACACCGACGAA-AGGGGUUGUGCG--AUCUGGGUGAGUGAUGU ((((((..((((((--((.(((...(((((((((((((((((...))))))))))).(-----(....-....)))))))).((----((((......))))))....-.))))))))).)--).))))))......... ( -56.40, z-score = -2.77, R) >droAna3.scaffold_13266 10238546 111 - 19884421 GCCCAGUUUCCAUACGGCUCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUCCAAUGGCUCACUAAAGGGGUGGCGCCCUU-------GGGUUCAUAUUUG-GCA-UAGGGUUAUGU-------------------- ((((.....((....)).........(((((((((((((.......))))))))((((.((((((((.....))))).))).))-------))..........)-)))-).)))).....-------------------- ( -39.70, z-score = -0.95, R) >droVir3.scaffold_12875 16633381 124 - 20611582 GCCCAAUUCCAUGG--ACCGUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUUUGUCGGCUUACAAUGCGCAUUGUGGGGGGU---GCUGGGCGGAGUUGGGGUUUUU----UUGUAC-CGGUAAGGGUUGC------ .(((((((((.(((--(((.((......((((((((((((((...)))))))))..).)))).((((((....)))))))).)))---.)))...)))))))))......----.....(-(.....)).....------ ( -44.10, z-score = -0.22, R) >droMoj3.scaffold_6496 21070114 132 + 26866924 GCCCGAUUCCAGAG--ACCGUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUUUGCCGGCUUACAAUGCGCAUUGUGGAGAGGAAAGCUGGGGGUGUUUAAGGGGGCUGGGGCUGUUCUCGGUAAGGGUUGC------ ((((...(((((..--.((.((..(((((((((((((((.......))))))))...(((((((.(..(.(((...))).)...).))))))).)))))))..)).)))))))((((....))))..))))...------ ( -48.40, z-score = -0.39, R) >droGri2.scaffold_15112 2217561 118 + 5172618 GCCCAAUUCUAGAG--ACUGUCAAAGAUGCCGCUCGUGUGUUUUGGACACGCGUUUCCCAGCUUACAAAGCGCAUUGUGGCCAGUUGGGGAGUGGGUGUGUGAG-----------UGUCU---AUAAGGGUUGC------ ...(((((((..((--((..(((.(.((.(((((((((((((...)))))))....((((((((((((......)))))...))))))))))))))).).))).-----------.))))---...))))))).------ ( -42.60, z-score = -1.70, R) >consensus GCCCAGUUUCCACA__GCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA_____CAAAAAGGGGGUGGCGUCCUU____GGUGGGAGCACACUGACGAA_AGGGGUUGUGCGCGAUCUGGGUGAGUGAUGU ((((.(((((.....................((((((((.......))))))))................(((......)))..........)))))...((........))...............))))......... (-15.72 = -16.04 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:16 2011