Locus 4797

Sequence ID dm3.chr2R
Location 15,666,126 – 15,666,236
Length 110
Max. P 0.857992
window6591

overview

Window 1

Location 15,666,126 – 15,666,236
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 52.73
Shannon entropy 0.68134
G+C content 0.40909
Mean single sequence MFE -34.50
Consensus MFE -6.00
Energy contribution -8.47
Covariance contribution 2.47
Combinations/Pair 1.46
Mean z-score -2.87
Structure conservation index 0.17
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.94
SVM RNA-class probability 0.857992
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15666126 110 + 21146708
CUUUGCUCUGGAAGCUAUGGAAAACAAGGAGUAUGCAGUAGGUGCCUUUCUUGAUAUUCAACAGGCAUUUGACAGAGUCUGGCACCCUGGGCUCCUGUACAAAGCGAAGA
(((((((.((...(((.((.....))...))).((((((((((((((...(((.....))).)))))))))...(((((..(....)..)))))))))))).))))))). ( -34.30, z-score =  -0.96, R)
>anoGam1.chr3R 40601717 110 + 53272125
AUAUUUUGAACGGAAUAAGAGGGUGAGCAAGUCCACCAUGGUCGCAAUGUUGGAUGUUGAAAAGGCAUUUGACAAUGUUUGGCAUGAUGGACUUGUUCAUAAACUUGUCA
............((.((((...(((((((((((((.((((.(.(((.(((..((((((.....))))))..))).)))..).)))).)))))))))))))...)))))). ( -42.50, z-score =  -5.33, R)
>triCas2.chrUn_210 8497 110 + 10089
AAAUAUCCUACAAAACUUCAUUACAGGAAAAAAGGCCGGAGCUGUUUUCCUGGAUGUAGCAAAAGCAUUUGAUAAAGUAUGGCACAAUGGCCUACUUUACAAACUAAUAA
...............((.((((.((((((((..(((....))).)))))))))))).))........((((.(((((((.(((......))))))))))))))....... ( -26.70, z-score =  -2.34, R)
>consensus
AUAUAUUCUACAAAAUAUGAAAAAAAGAAAGUACGCCGUAGCUGCAUUCCUGGAUGUUGAAAAGGCAUUUGACAAAGUAUGGCACAAUGGACUACUUUACAAACUAAUAA
........................((((((((...(((....((((.(((((((((((.....))))))...)))))...))))...)))))))))))............ ( -6.00 =  -8.47 +   2.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:11 2011