| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,650,355 – 15,650,443 |
| Length | 88 |
| Max. P | 0.990616 |
| Location | 15,650,355 – 15,650,443 |
|---|---|
| Length | 88 |
| Sequences | 3 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 81.06 |
| Shannon entropy | 0.26088 |
| G+C content | 0.50379 |
| Mean single sequence MFE | -29.13 |
| Consensus MFE | -29.37 |
| Energy contribution | -27.83 |
| Covariance contribution | -1.54 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.97 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.990616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15650355 88 + 21146708 CCAUCUAAGUACUAACCGCGCCCGACGCUGCUUAAUUUCGGUGAUCGGACGAGAACCGAUGUAUUCAGCGUGGUAUGGUCGUUGGCAA ........((....((((..((..((((((..((...(((((..((....))..)))))..))..))))))))..)))).....)).. ( -28.80, z-score = -1.33, R) >anoGam1.chr2L 13376028 88 + 48795086 CCACCUAAGUACUAGCCAUGCCCGAUGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACAUGGUAUGGUCGUUGACAA ........((....((((((((..((((((...(((.(((((..((....))..))))).)))..)))))))))))))).....)).. ( -29.20, z-score = -2.33, R) >apiMel3.GroupUn 327590620 88 - 399230636 CCAUUCAAGUAUUAACCGUGCCCGACGUAGCUUGACUUUGGUGAUCGAACGAGAACCAGUAGUUCCUACGUGGUAUGGUCGUUGGCGA ........((....((((((((..((((((...(((((((((..((....))..))))).)))).)))))))))))))).....)).. ( -29.40, z-score = -2.26, R) >consensus CCAUCUAAGUACUAACCGUGCCCGACGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACGUGGUAUGGUCGUUGGCAA ........((....((((((((..((((((...(((.(((((..((....))..))))).)))..)))))))))))))).....)).. (-29.37 = -27.83 + -1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:07 2011