| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,645,924 – 15,645,987 |
| Length | 63 |
| Max. P | 0.982045 |
| Location | 15,645,924 – 15,645,987 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.31081 |
| G+C content | 0.51315 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -17.31 |
| Energy contribution | -16.10 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.982045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15645924 63 + 21146708 UACUAA--CCGCGCCCGACGCUGCUUAAUUUCGGUGAUCGGACGAGAACCGAUGUAUUCAGCGUG ......--.........((((((..((...(((((..((....))..)))))..))..)))))). ( -20.00, z-score = -2.10, R) >anoGam1.chr2L 13362184 63 + 48795086 UACUAG--CCAUGCCCGAUGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACAUG ......--.........((((((...(((.(((((..((....))..))))).)))..)))))). ( -16.40, z-score = -1.30, R) >apiMel3.GroupUn 283677460 65 + 399230636 GACUAAAACCGUGCCCGACGUAGCUUGACUUUGGUGAUCGAACGAGAACCAGUAGUUCCUACGUG .................((((((...(((((((((..((....))..))))).)))).)))))). ( -17.00, z-score = -1.91, R) >consensus UACUAA__CCGUGCCCGACGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACGUG .................((((((...(((.(((((..((....))..))))).)))..)))))). (-17.31 = -16.10 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:05 2011