| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,349,213 – 3,349,306 |
| Length | 93 |
| Max. P | 0.750833 |
| Location | 3,349,213 – 3,349,306 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.44 |
| Shannon entropy | 0.44506 |
| G+C content | 0.43070 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -13.59 |
| Energy contribution | -13.98 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3349213 93 + 23011544 ---------------AAAGCCUUUCACAUGCAAAUAGCUGGAAUAGGCAAAGUUCAAACAAUAGAUAUCAGAUAUCUA-----------GCUUGGGUAGGAUGCUCAUGGGAGGCGCCC ---------------...((((..((...(((....(((......)))...(..(((....(((((((...)))))))-----------..)))..)....)))...))..)))).... ( -25.00, z-score = -1.10, R) >droSim1.chr2L 3287405 93 + 22036055 ---------------AAAGCCUUUCACAUGCAAAUACCUGGAAUAGGCAAAGUUCAAACAAUAGAUAUCAGAUAUCUA-----------GCUUGGGCAGGAUGCUCAUGGGAGGCGCCC ---------------...((((..((...(((....((((...(((((...((....))..(((((((...)))))))-----------)))))..)))).)))...))..)))).... ( -28.30, z-score = -2.11, R) >droSec1.super_5 1496483 93 + 5866729 ---------------AAAGCCUUUCACAUGCAAAUACCUGGAAUAGGCAAAGUUCAAACAAUAGAUAUCAGAUAUCUA-----------GCUUGGGCAGGAUGCUCAUGGGAGGCGCCC ---------------...((((..((...(((....((((...(((((...((....))..(((((((...)))))))-----------)))))..)))).)))...))..)))).... ( -28.30, z-score = -2.11, R) >droYak2.chr2L 3333944 105 + 22324452 --------------AAAAGCCUUUCGCAUGCAAAUAGCAGAAAUGGGCAAGGUUCGAACAAUAGAUAUCAGAUAUCUACUAGAAAUCUAGCUUGAGCAGGAUGCCCAUGGGAGGCGCCC --------------....((((..(...(((.....)))...(((((((..((((((....(((((((...)))))))((((....)))).))))))....))))))))..)))).... ( -36.80, z-score = -3.58, R) >droEre2.scaffold_4929 3379605 95 + 26641161 -------------AAAAGCCCUUUCACAUGCAAAUGGCAAAAAUAGGCAAGGUUCGAACAAUAGAUAUCAGAUAUCUA-----------GCUUGGGCAGGAUGCCCAUGGGAGGCGCCC -------------....(((((..((..(((.....)))......((((..((((((....(((((((...)))))))-----------..))))))....))))..))..))).)).. ( -26.70, z-score = -0.77, R) >droAna3.scaffold_12916 2801253 97 - 16180835 AAAAUACCCAAAACAAAAGCCUUUCUUAUGCAAAUUUCUAUUA-----AAAUGUCUAACAAUA-AGAACUGAAAUUUG-----------AAUCUCUGAGGAAUCUGAUGAGGGG----- ......(((..(.((....((((.......((((((((..((.-----...((.....))...-..))..))))))))-----------.......))))....)).)..))).----- ( -15.84, z-score = -0.98, R) >consensus _______________AAAGCCUUUCACAUGCAAAUAGCUGGAAUAGGCAAAGUUCAAACAAUAGAUAUCAGAUAUCUA___________GCUUGGGCAGGAUGCUCAUGGGAGGCGCCC ..................((((((((...................................((((((.....))))))..............(((((.....))))))))))))).... (-13.59 = -13.98 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:38 2011