Sequence ID | dm3.chr2R |
---|---|
Location | 15,642,586 – 15,642,675 |
Length | 89 |
Max. P | 0.964530 |
Location | 15,642,586 – 15,642,675 |
---|---|
Length | 89 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 77.49 |
Shannon entropy | 0.31006 |
G+C content | 0.52039 |
Mean single sequence MFE | -30.03 |
Consensus MFE | -26.89 |
Energy contribution | -25.90 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.33 |
Mean z-score | -1.74 |
Structure conservation index | 0.90 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.964530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15642586 89 + 21146708 CCCAUCUAAGUACUAA--CCGCGCCCGACGCUGCUUAAUUUCGGUGAUCGGACGAGAACCGAUGUAUUCAGCGUGGUAUGGUCGUUGGCGA .........((....(--(((..((..((((((..((...(((((..((....))..)))))..))..))))))))..)))).....)).. ( -28.80, z-score = -0.90, R) >anoGam1.chr2L 13364176 89 + 48795086 CCCACCUAAGUACUAG--CCAUGCCCGAUGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACAUGGUAUGGUCGUUGACAA .........((....(--(((((((..((((((...(((.(((((..((....))..))))).)))..)))))))))))))).....)).. ( -29.20, z-score = -2.25, R) >apiMel3.GroupUn 283677450 91 + 399230636 ACCGAGAAGGGACUAAAACCGUGCCCGACGUAGCUUGACUUUGGUGAUCGAACGAGAACCAGUAGUUCCUACGUGGUAUGGUCGUUGGCGA .((.....))(.((((.((((((((..((((((...(((((((((..((....))..))))).)))).))))))))))))))..))))).. ( -32.10, z-score = -2.07, R) >consensus CCCAACUAAGUACUAA__CCGUGCCCGACGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACGUGGUAUGGUCGUUGGCGA ............((((..(((((((..((((((...(((.(((((..((....))..))))).)))..)))))))))))))...))))... (-26.89 = -25.90 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:01 2011