| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,642,217 – 15,642,306 |
| Length | 89 |
| Max. P | 0.964530 |
| Location | 15,642,217 – 15,642,306 |
|---|---|
| Length | 89 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 77.49 |
| Shannon entropy | 0.31006 |
| G+C content | 0.52039 |
| Mean single sequence MFE | -30.03 |
| Consensus MFE | -26.89 |
| Energy contribution | -25.90 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15642217 89 + 21146708 CCCAUCUAAGUACUAA--CCGCGCCCGACGCUGCUUAAUUUCGGUGAUCGGACGAGAACCGAUGUAUUCAGCGUGGUAUGGUCGUUGGCGA .........((....(--(((..((..((((((..((...(((((..((....))..)))))..))..))))))))..)))).....)).. ( -28.80, z-score = -0.90, R) >anoGam1.chr2L 13363677 89 + 48795086 CCCACCUAAGUACUAG--CCAUGCCCGAUGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACAUGGUAUGGUCGUUGACAA .........((....(--(((((((..((((((...(((.(((((..((....))..))))).)))..)))))))))))))).....)).. ( -29.20, z-score = -2.25, R) >apiMel3.GroupUn 283677450 91 + 399230636 ACCGAGAAGGGACUAAAACCGUGCCCGACGUAGCUUGACUUUGGUGAUCGAACGAGAACCAGUAGUUCCUACGUGGUAUGGUCGUUGGCGA .((.....))(.((((.((((((((..((((((...(((((((((..((....))..))))).)))).))))))))))))))..))))).. ( -32.10, z-score = -2.07, R) >consensus CCCAACUAAGUACUAA__CCGUGCCCGACGUUGCUUAACUUCGGUGAUCGGACGAGAACCGGUGUUUUCAACGUGGUAUGGUCGUUGGCGA ............((((..(((((((..((((((...(((.(((((..((....))..))))).)))..)))))))))))))...))))... (-26.89 = -25.90 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:00 2011