| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,638,920 – 15,638,999 |
| Length | 79 |
| Max. P | 0.755270 |
| Location | 15,638,920 – 15,638,999 |
|---|---|
| Length | 79 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 56.23 |
| Shannon entropy | 0.58163 |
| G+C content | 0.49158 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -12.70 |
| Energy contribution | -10.83 |
| Covariance contribution | -1.87 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15638920 79 + 21146708 UACUAACCGCGCCCGACGCUG--------CUUAAUUUCGGUGAUCGGACGAGAACCGAU------GUAUUCAGCGUGGUAUGGUCGUUGGCGA .....((((..((..((((((--------..((...(((((..((....))..))))).------.))..))))))))..))))((....)). ( -27.70, z-score = -1.23, R) >droPer1.super_1075 6042 89 - 9554 UACUGACCAAAACUAACAAUAAGAUGGGUUUUAGUUCAAACGACUAGACUAGGAUCUGCUGGCAGGGAUUGGAUGUGGUAUGG--GGUGCC-- ......((((..((..(....((.(((((((((((..(......)..))))))))))))).)..))..))))....(((((..--.)))))-- ( -16.80, z-score = 0.87, R) >anoGam1.chr2L 13364688 79 + 48795086 UACUAGCCAUGCCCGAUGUUG--------CUUAACUUCGGUGAUCGGACGAGAACCGGU------GUUUUCAACAUGGUAUGGUCGUUGACAA .....((((((((..((((((--------...(((.(((((..((....))..))))).------)))..))))))))))))))......... ( -28.20, z-score = -2.80, R) >consensus UACUAACCAAGCCCGACGAUG________CUUAAUUUCGGUGAUCGGACGAGAACCGGU______GUAUUCAACGUGGUAUGGUCGUUGAC_A .....((((.(((..((((((...............(((((..((......)))))))............))))))))).))))......... (-12.70 = -10.83 + -1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:56 2011