| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,638,505 – 15,638,630 |
| Length | 125 |
| Max. P | 0.998655 |
| Location | 15,638,505 – 15,638,630 |
|---|---|
| Length | 125 |
| Sequences | 4 |
| Columns | 128 |
| Reading direction | reverse |
| Mean pairwise identity | 64.03 |
| Shannon entropy | 0.58194 |
| G+C content | 0.53468 |
| Mean single sequence MFE | -48.68 |
| Consensus MFE | -24.33 |
| Energy contribution | -26.34 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.44 |
| SVM RNA-class probability | 0.998655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15638505 125 - 21146708 UCGCCAACGACCAUACCACGCUGAAUACAUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUCGGGCGCGGU--UAGUACUUAG-AUGGGGGACCGCUUGGGAACACCGCGUGUUGUUGGCCUCGU ..(((((((((....((((((((......(((((..((....))..))))).......)))))).))(((((((--..((.(((((-.(((....))).))))).))))))))))))))))))..... ( -55.02, z-score = -3.57, R) >droSec1.super_3165 1074 119 - 4955 UUGCC-----CCAUGCCCCGUGGACCACGUAGGUUCUGGUUUUUUGUCGGUAACACGAAAAUAUCGGGGGUGGG--UGGUGGUUAGAAUGUGAGACCGGGUUGGG--GUUGCGCACUGUCGAUCGCGU ...((-----((((.((((..(((((.....))))).((((((((((.(....)))))))).))))))))))))--.)((((((.((.((((..(((.......)--))..))))...)))))))).. ( -40.20, z-score = 0.46, R) >anoGam1.chr2L 13364140 125 - 48795086 UUGUCAACGACCAUACCAUGUUGAAAACACCGGUUCUCGUCCGAUCACCGAAGUUAAGCAACAUCGGGCAUGGC--UAGUACUUAG-GUGGGUGACCACUUGGGAAAACCAUGUGUCGUUGGCAUCUU .((((((((((....((((((((..(((..((((..((....))..))))..)))...)))))).))((((((.--.....(((((-((((....)))))))))....)))))))))))))))).... ( -52.80, z-score = -4.96, R) >apiMel3.GroupUn 283677414 127 - 399230636 UCGCCAACGACCAUACCACGUAGGAACUACUGGUUCUCGUUCGAUCACCAAAGUCAAGCUACGUCGGGCACGGUUUUAGUCCCUUC-UCGGUUGACCGCUUGGGAACACCGUGUGUUGUUGGUUUCUU ..(((((((((....((((((((..(((..((((..((....))..)))).)))....)))))).))(((((((.....((((...-.(((....)))...))))..))))))))))))))))..... ( -46.70, z-score = -2.88, R) >consensus UCGCCAACGACCAUACCACGUUGAAAACACCGGUUCUCGUCCGAUCACCGAAAUUAAGCAACAUCGGGCACGGU__UAGUACUUAG_AUGGGUGACCGCUUGGGAACACCGCGUGUUGUUGGCCUCGU ..(((((((((....((((((((.......((((..((....))..))))........)))))).))(((((((....((.((((...(((....)))..)))).))))))))))))))))))..... (-24.33 = -26.34 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:55 2011