| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,628,176 – 15,628,305 |
| Length | 129 |
| Max. P | 0.834147 |
| Location | 15,628,176 – 15,628,305 |
|---|---|
| Length | 129 |
| Sequences | 3 |
| Columns | 146 |
| Reading direction | reverse |
| Mean pairwise identity | 53.92 |
| Shannon entropy | 0.62147 |
| G+C content | 0.51068 |
| Mean single sequence MFE | -42.64 |
| Consensus MFE | -9.66 |
| Energy contribution | -10.12 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15628176 129 - 21146708 UCGCCAACGACCAUACCACGCUGAAUAC------AUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUCGGGCGCGGUUAGUACU------UAGAUGAGGGACCGCUUGGGAACACCGCGUGUUGUU----GGCCUCGUCCAC- ..((((((((((...((((((((.....------.(((((..((....))..))))).......)))))).))((((((((....((------(....))).))))))..((.....))))).))))))----))).........- ( -49.02, z-score = -2.23, R) >droPer1.super_1075 1709 135 + 9554 ----------CCAUACCACAUCCAAUCCCUGCCAGCAGAUCCUAGUCUAGUCGUUUGAACUAAA-AACCCAUCCUAUUGUUAGUUUUGGUCAGUCGAAGGCAGAACACAAAGGAAACCAACGUUCAGCUCCCAGGCUUUCGCCAAC ----------.................((((..(((........((((..(((.((((.(((((-(...((......))....)))))))))).))))))).((((.....(....)....)))).)))..))))........... ( -26.10, z-score = -0.72, R) >anoGam1.chr2L 13377494 126 - 48795086 UUGUCAACGACCAUACCAUGUUGAAAAC------ACCGGUUCUCGUCCGAUCACCGAAGUUAAGCAACAUCGGGCAUGGCUAGUACU------UAGGUGGGUGACCACUUGGGAAAACCAUGUGUCGUU----GGCAUCUUC---- .((((((((((....((((((((..(((------..((((..((....))..))))..)))...)))))).))((((((......((------(((((((....)))))))))....))))))))))))----)))).....---- ( -52.80, z-score = -4.96, R) >consensus U_G_CAACGACCAUACCACGUUGAAUAC______ACCGGUUCUCGUCCGAUCACCGAAAUUAAGCAACAUCGGGCAUGGUUAGUACU______UAGAUGGGAGACCACUUGGGAAAACCACGUGUAGUU____GGCAUCCUCCA__ ..........((...(((((((.............(((((..((....))..)))))...............)))))))..........................(((.(((.....))).))).........))........... ( -9.66 = -10.12 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:52 2011