| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,627,092 – 15,627,211 |
| Length | 119 |
| Max. P | 0.951179 |
| Location | 15,627,092 – 15,627,211 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 56.88 |
| Shannon entropy | 0.58243 |
| G+C content | 0.51056 |
| Mean single sequence MFE | -41.01 |
| Consensus MFE | -13.36 |
| Energy contribution | -15.17 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15627092 119 - 21146708 UCGCCAACGACCAUACCACGCUGAAUAC------AUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUC----GGGCGCGGUUAGUACUUAGAUGGGGGACCGCUUGGGAACACCGCGUGUUGUUGG---- ...((((((((....((((((((.....------.(((((..((....))..))))).......)))))).----))(((((((..((.(((((.(((....))).))))).)))))))))))))))))---- ( -50.72, z-score = -3.51, R) >droPer1.super_1075 6002 129 + 9554 --GGCACC--CCAUACCACAUCCAAUCCCUGCCAGCAGAUCCUAGUCUAGUCGUUUGAACUAAAACCCAUCUUAUUGUUAGUUUUGGUCAGUAGAAGGCAGAACACAAAGGAAACCAACGUUCAGCUCCCAGG --((....--))...............((((..(((........((((..((..((((.(((((((.((......))...)))))))))))..)))))).((((.....(....)....)))).)))..)))) ( -24.50, z-score = -0.17, R) >anoGam1.chr2L 13361141 119 - 48795086 UUGUCAACGACCAUACCAUGUUGAAAAC------ACCGGUUCUCGUCCGAUCACCGAAGUUAAGCAACAUC----GGGCAUGGCUAGUACUUAGGUGGGUGACCACUUGGGAAAACCAUGUGUCGUUGG---- ....(((((((....((((((((..(((------..((((..((....))..))))..)))...)))))).----))((((((......(((((((((....)))))))))....))))))))))))).---- ( -47.80, z-score = -3.95, R) >consensus U_GCCAACGACCAUACCACGUUGAAUAC______ACCGGUUCUCGUCCGAUCACCGAAAUUAAGCAACAUC____GGGCACGGUUAGUACUUAGAUGGGAGACCACUUGGGAAAACCACGUGUAGUUGG____ ...((((((((........................(((((..((....))..)))))....................((((((......(((((.(((....))).)))))....)))))))))))))).... (-13.36 = -15.17 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:51 2011