| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,624,882 – 15,624,987 |
| Length | 105 |
| Max. P | 0.567958 |
| Location | 15,624,882 – 15,624,987 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 57.82 |
| Shannon entropy | 0.56650 |
| G+C content | 0.49703 |
| Mean single sequence MFE | -33.24 |
| Consensus MFE | -10.42 |
| Energy contribution | -10.00 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15624882 105 - 21146708 ACCAUACCACGCUGAAUAC------AUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUCGGGCGCGGUUAGUACU------UAGAUGGGGGACCGCUUGGGAACACCGCGUGUU ......((((((((.....------.(((((..((....))..))))).......)))))).))(((((((..((.((------(((.(((....))).))))).)))))))))... ( -40.92, z-score = -2.53, R) >droPer1.super_1075 1729 115 + 9554 -CCAUACCACAUCCAAUCCCUGCCAGCAGAUCCUAGUCUAGUCGUUUGAACUAAA-AACCCAUCCUAUUGUUAGUUUUGGUCAGUCGAAGGCAGAACACAAAGGAAACCAACGUUCA -...................((((...((((....))))..(((.((((.(((((-(...((......))....)))))))))).))).))))((((.....(....)....)))). ( -20.80, z-score = -0.75, R) >anoGam1.chr2L 13360645 105 - 48795086 ACCAUACCAUGUUGAAAAC------ACCGGUUCUCGUCCGAUCACCGAAGUUAAGCAACAUCGGGCAUGGCUAGUACU------UAGGUGGGUGACCACUUGGGAAAACCAUGUGUC ......((((((((..(((------..((((..((....))..))))..)))...)))))).))((((((......((------(((((((....)))))))))....))))))... ( -38.00, z-score = -2.74, R) >consensus ACCAUACCACGUUGAAUAC______ACCGGUUCUCGUCCGAUCACCGAAAUUAAGCAACAUCGGGCAUGGUUAGUACU______UAGAUGGGAGACCACUUGGGAAAACCACGUGUA .((((.....................(((((..((....))..)))))(((((.((........)).)))))...............)))).....(((.(((.....))).))).. (-10.42 = -10.00 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:48 2011