| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,604,348 – 15,604,399 |
| Length | 51 |
| Max. P | 0.998298 |
| Location | 15,604,348 – 15,604,399 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 55.00 |
| Shannon entropy | 0.62331 |
| G+C content | 0.49853 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -10.92 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.31 |
| SVM RNA-class probability | 0.998298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15604348 51 - 21146708 ACGUCUGCUUGGUAGACAUUCGCUGUUGUCAUGUGCGGCGCGCCGGUGGAA--------- ..((((((...)))))).(((((((.((((......))))...))))))).--------- ( -15.40, z-score = 0.32, R) >dp4.Unknown_group_65 3014 60 - 26850 AUAUCUCGCUGGCCGUCUCCCAACGUGGUGGUUCGUUGGUGGCUAGUAAUUUUAAAAGUU .......((((((((....((((((........))))))))))))))............. ( -19.00, z-score = -3.15, R) >droPer1.super_426 9567 59 - 15460 AUAUAU-GCUGGCCGUCUCCCAACGUGGUGGUUCGUUGGUGGCUAGUAAUUUUAAAAGUU .....(-((((((((....((((((........)))))))))))))))............ ( -20.10, z-score = -3.45, R) >consensus AUAUCU_GCUGGCCGUCUCCCAACGUGGUGGUUCGUUGGUGGCUAGUAAUUUUAAAAGUU .......((((((((....((((((........))))))))))))))............. (-10.92 = -11.60 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:44 2011