Locus 4774

Sequence ID dm3.chr2R
Location 15,603,250 – 15,603,300
Length 50
Max. P 0.901507
window6557

overview

Window 7

Location 15,603,250 – 15,603,300
Length 50
Sequences 5
Columns 50
Reading direction forward
Mean pairwise identity 93.60
Shannon entropy 0.11103
G+C content 0.44800
Mean single sequence MFE -12.62
Consensus MFE -12.26
Energy contribution -11.74
Covariance contribution -0.52
Combinations/Pair 1.24
Mean z-score -1.50
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.16
SVM RNA-class probability 0.901507
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15603250 50 + 21146708
GCAGUAAAGUUUGUUUGUGCUGGACUGCCGGAUCCACAAAAUAGAUUUGC
(((((..(((........)))..)))))((((((.........)))))). ( -11.70, z-score =  -0.97, R)
>droSim1.chr2R 14304622 50 + 19596830
GCAGUAAAGUUUGUUUGUGCCGGACUGCCGGAUCCACAAAAUAGAUUUGC
......(((((((((((((((((....))))...))).)))))))))).. ( -13.60, z-score =  -1.82, R)
>droSec1.super_337 12849 50 + 15450
GCAGUAAAUUUUGUUUGUGCCGGACUGCCGGAUCCACAAAAUAGAUUUGC
...((((((((..((((((((((....))))...))))))..)))))))) ( -15.70, z-score =  -2.90, R)
>droYak2.chr2R 7573242 50 - 21139217
GCAUUAAGGUUUGUUUGUGCCGAACUGUCGGACCCACAAAAUAGAUUUGC
......(((((((((((((((((....))))...))).)))))))))).. ( -11.30, z-score =  -1.11, R)
>droEre2.scaffold_4845 9803823 50 + 22589142
GCAGUAAAGUUUGUUUGUGCCGGACUGUCGGACCCACAAAAUAGAUUUGC
......(((((((((((((((((....))))...))).)))))))))).. ( -10.80, z-score =  -0.68, R)
>consensus
GCAGUAAAGUUUGUUUGUGCCGGACUGCCGGAUCCACAAAAUAGAUUUGC
......(((((((((((((((((....))))...))).)))))))))).. (-12.26 = -11.74 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:44 2011