| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,594,548 – 15,594,639 |
| Length | 91 |
| Max. P | 0.595977 |
| Location | 15,594,548 – 15,594,639 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 87.05 |
| Shannon entropy | 0.25809 |
| G+C content | 0.29640 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -10.96 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15594548 91 - 21146708 ----ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACC-AAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----(((.((.(((..(((..(((...(((((((....))))))).....((((((.....))-)))))))..))).))).)).))).........--------- ( -19.10, z-score = -2.62, R) >droSim1.chr2R 14295877 91 - 19596830 ----ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACC-AAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----(((.((.(((..(((..(((...(((((((....))))))).....((((((.....))-)))))))..))).))).)).))).........--------- ( -19.10, z-score = -2.62, R) >droSec1.super_1 13108899 91 - 14215200 ----ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACC-AAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----(((.((.(((..(((..(((...(((((((....))))))).....((((((.....))-)))))))..))).))).)).))).........--------- ( -19.10, z-score = -2.62, R) >droEre2.scaffold_4845 9794713 91 - 22589142 ----ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACC-AAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----(((.((.(((..(((..(((...(((((((....))))))).....((((((.....))-)))))))..))).))).)).))).........--------- ( -19.10, z-score = -2.62, R) >droYak2.chr2R 7563218 91 + 21139217 ----ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACC-AAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----(((.((.(((..(((..(((...(((((((....))))))).....((((((.....))-)))))))..))).))).)).))).........--------- ( -19.10, z-score = -2.62, R) >dp4.chr3 12751812 92 - 19779522 ----ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACCAAAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----(((.((.(((..(((..(((...(((((((....)))))))....(((((((.....))))))))))..))).))).)).))).........--------- ( -20.10, z-score = -2.86, R) >droWil1.scaffold_180701 1747787 105 - 3904529 GCACACUUUUUGGCCUAUUUUAUGGCGCAUUUUGUUACCAAAGCGAAAAUUUUUGGUAAUAAGAGUCACAUUUAAUUGCCUAAUUGUUUUGUUUUGUUUUUCGUU (((.((..((.(((..(((..(((..((.((((((((((((((.......))))))))))))))))..)))..))).))).))..))..)))............. ( -22.50, z-score = -1.66, R) >droPer1.super_2 175901 92 + 9036312 ----ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACCAAAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----(((.((.(((..(((..(((...(((((((....)))))))....(((((((.....))))))))))..))).))).)).))).........--------- ( -20.10, z-score = -2.86, R) >droMoj3.scaffold_6496 21007152 91 - 26866924 ----GUCCUUGGCGGCAUUUUAUGACGCGUUUUGUUACCAAAACAAAAAUUUUCGGUAAUAUG-CGCACAUUUAAUUGCCUAAUUGUUUUGUUCUU--------- ----((.....))((((((..(((..((((..(((((((((((......)))).))))))).)-))).)))..)).))))................--------- ( -20.10, z-score = -1.47, R) >droGri2.scaffold_15112 2167491 92 - 5172618 ----GUCCCUCAGGCC-UUUUACGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUAUG-AGCGAAUUUAAUUGCCUAAUUGUUUUGUUUCCUU------- ----.......((((.-.((.....(((....(((((((((((.......)))))))))))..-.))).....))..)))).................------- ( -20.10, z-score = -2.27, R) >droVir3.scaffold_12875 16572321 91 + 20611582 ----GUCCUUGGCCGUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUAUG-AGCACAUUUAAUUGCCUAAUUGUUUUGUUUUU--------- ----......(((...(((..(((..((....(((((((((((.......)))))))))))..-.)).)))..))).)))................--------- ( -18.10, z-score = -1.48, R) >consensus ____ACAUUUUGGCUUAUUUUAUGACGCGUUUUGUUACCAAAACGAAAAUUUUUGGUAAUACC_AAGACAUUUAAUUGCCUAAUUGUUUUGUUUUU_________ ...........(((..(((..(((........(((((((((((.......))))))))))).......)))..))).)))......................... (-10.96 = -11.70 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:43 2011