| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,589,454 – 15,589,545 |
| Length | 91 |
| Max. P | 0.789485 |
| Location | 15,589,454 – 15,589,545 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.24 |
| Shannon entropy | 0.47270 |
| G+C content | 0.44952 |
| Mean single sequence MFE | -15.92 |
| Consensus MFE | -9.74 |
| Energy contribution | -10.36 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.789485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15589454 91 + 21146708 ---AGCCACCCUGCAGCGAAGUUUUUAUAAAA-UUAAAUUACAUUAAUGUGAGAACCGCAGGGAAAGCCUCCCCCUUCAAAGCAUCAGCACUCAA-------------- ---.((.....(((.(((..((((((((...(-((((......)))))))))))))))).((((.....))))........)))...))......-------------- ( -17.50, z-score = -1.40, R) >droSim1.chr2R 14290979 96 + 19596830 ---AGCCACCCUGCAGCGAAGUUUUUAUAAAA-UUAAAUUACAUUAAUGUGAGAACCGCAGGGAAAGCCUCCCCCU-CAAAGCAUCAGCACUCAACCCCAG-------- ---.((.....(((.(((..((((((((...(-((((......)))))))))))))))).((((.....))))...-....)))...))............-------- ( -17.50, z-score = -1.66, R) >droSec1.super_1 13103907 96 + 14215200 ---AGCCACCCUGCAGCGAAGUUUUUAUAAAA-UUAAAUUACAUUAAUGUGAGAACCGCAGGGAAGGCCUCCCCCU-CAAAACAUCAGCACUCAACCCCAG-------- ---.(((.((((((......((((((((...(-((((......))))))))))))).))))))..)))........-........................-------- ( -18.50, z-score = -1.62, R) >droYak2.chr2R 7556330 104 - 21139217 ---AGCCACCCUGCAGCGAAGUUUUUAUAAAA-UUAAAUUACAUUAAUGUGAGAACCGCAGGGCGAGCCUCCCCCU-CAAAGCGUCAGCACUCAACCCCAGCACAAAAA ---.(((.((((((......((((((((...(-((((......))))))))))))).)))))).).))........-....((....)).................... ( -19.30, z-score = -1.09, R) >droEre2.scaffold_4845 9789723 104 + 22589142 ---AGCCACCCCGCAGCGAAGUUUUUAUAAAA-UUAAAUUACAUUAAUGUGAGAACCGCAGGGAAGGCCUCGCCCU-CAAAGCAUCACCACUCAACCCCAGAACUCCCA ---.(((..(((...(((..((((((((...(-((((......)))))))))))))))).)))..)))...((...-....)).......................... ( -18.70, z-score = -1.25, R) >droAna3.scaffold_13266 10192194 87 - 19884421 ---AGUCACCCCGCAGCGGAGUUUU-AUAAAA-UUAAAUUACAUUAAUGUGAGAACCGCAGGCUAACCACCCAACU----CGCAGCAUCAACCAAC------------- ---.........((.((((..((((-((...(-((((......))))))))))).)))).((....))........----.)).............------------- ( -12.60, z-score = -0.47, R) >droWil1.scaffold_180701 1733260 88 + 3904529 -----CCACCCUUC-GCGUAGUUUUUAUAAAAAUUAAAUUACAUUAAUGUGAGAACCGCAGGGCGAAAUAAGCCAACCCAAACCACCCAACCCA--------------- -----.(.((((..-(((..(((((((((..(((........)))..)))))))))))))))).).............................--------------- ( -13.60, z-score = -1.69, R) >droGri2.scaffold_15112 2159992 86 + 5172618 AACAACCCCCCUG-AGCGUAGUUUUUAUAAAA-UUAAAUUACAUUAAUGUGAGAACCGCAGGCAACCACCCACACU--------CCCCCAUCAAAC------------- ...........((-((((..((((((((...(-((((......)))))))))))))))).(....)..........--------......)))...------------- ( -9.70, z-score = -1.29, R) >consensus ___AGCCACCCUGCAGCGAAGUUUUUAUAAAA_UUAAAUUACAUUAAUGUGAGAACCGCAGGGAAAGCCUCCCCCU_CAAAGCAUCAGCACUCAAC_____________ ........((((...(((..(((((((((....((((......)))))))))))))))))))).............................................. ( -9.74 = -10.36 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:41 2011