| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,585,899 – 15,585,969 |
| Length | 70 |
| Max. P | 0.897230 |
| Location | 15,585,899 – 15,585,969 |
|---|---|
| Length | 70 |
| Sequences | 12 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 61.99 |
| Shannon entropy | 0.79996 |
| G+C content | 0.44391 |
| Mean single sequence MFE | -16.04 |
| Consensus MFE | -7.74 |
| Energy contribution | -8.00 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15585899 70 - 21146708 AAUCACAAUUUGCCAAGCAUUA-------AAU-CCCUAACUUCUUUAGGCCUUAGCCUCGGGGGCGGGCUUGAAGCUC ..........(((...)))...-------...-.........((((((((((..(((.....)))))))))))))... ( -17.00, z-score = 0.09, R) >droSim1.chr2R 14287422 70 - 19596830 AAUCACAAUUUGCCAAGCAUUA-------ACU-UCUUAACUUCUUUAGGCCUUAGCCUCGGGGGCGGGCUUGAAGCUC ..........(((...)))...-------...-.........((((((((((..(((.....)))))))))))))... ( -17.00, z-score = -0.44, R) >droSec1.super_1 13100346 70 - 14215200 AAUCACAAUUUGCCAAGCAUUA-------AGU-UCCUAACUUCUUUAGGCCUUAGCCUCGGGGGCGGGCUUGAAGCUC ...............(((.(((-------(((-((....(((((..((((....)))).))))).)))))))).))). ( -17.50, z-score = 0.01, R) >droYak2.chr2R 7552755 70 + 21139217 AAUCACAAUUUGCCAUGGUUCA-------ACU-CCCAAACUUCCUUAGGCCUUAGCCUCCGGGGCGGGCUUGAAGCUC ...........(((.(((....-------...-.))).....((..((((....))))..)))))((((.....)))) ( -17.40, z-score = 0.15, R) >droEre2.scaffold_4845 9786225 70 - 22589142 AAUCACAAUUUGCCUGGCAUCA-------ACU-GCCAAACUUCCUUAGGCCUUUGCCUCGGGGGCGGGCUUGAAGCUC ...........((((((((...-------..)-)))).....(((.((((....)))).))))))((((.....)))) ( -23.50, z-score = -1.27, R) >droAna3.scaffold_13266 10188782 62 + 19884421 AAUCACAAUUUGCCAAACACCA-------UCCAUCGGGAUAACUUUAGGCCUU---------GACGGGCUUGAAUUCC .....................(-------(((....))))...(((((((((.---------...))))))))).... ( -12.50, z-score = -0.80, R) >dp4.chr3 12742983 66 - 19779522 AAUCACUUUUUGCCAGAAUUCA------UAUUUUUUGAUCUAGUUUAAGCCUUAGCUUGG------GGCUUGAACUCC .............(((((....------....)))))....((((((((((((.....))------)))))))))).. ( -16.30, z-score = -2.27, R) >droPer1.super_2 167132 66 + 9036312 AAUCACUUUUUGCCAGAAUUCA------UAUUUUUUGAUCUAGUUUAAGCCUUAGCUUGG------GGCUUGAACUCC .............(((((....------....)))))....((((((((((((.....))------)))))))))).. ( -16.30, z-score = -2.27, R) >droWil1.scaffold_180701 1722434 73 - 3904529 AAUUACAAUUUGUCACGUUUCGC-----UAUUGAAUGAUUCGAUUUAAGCCUUAAUCUCGUGCUUUGGCUUGAACUCC ...............((..(((.-----.......)))..)).((((((((...............)))))))).... ( -10.56, z-score = -0.31, R) >droVir3.scaffold_12875 16559354 65 + 20611582 AAUUACAAUUUGUCAGCAUGUGC----------UGGUCGCUGCUUUAAGCCUGCACCUC---GAUGGGCUUGAAGGAC ...........((((((....))----------))).)....((((((((((((.....---).)))))))))))... ( -18.60, z-score = -0.88, R) >droMoj3.scaffold_6496 20993729 67 - 26866924 AAUUACAAUUUGUCAGCAUGUGAAC--------AAAAUGUUGCUUUAAGCCUUAAUCUC---GACGGGAUUGAAGGAU ...........(.((((((......--------...)))))))......(((((((((.---....)))))).))).. ( -12.00, z-score = -0.49, R) >droGri2.scaffold_15112 2154773 75 - 5172618 GAUUACAAGUUGUCUGCAUGUGCACCUGUUUUAAGCUUUAUAGUUUAUGCCUUGACUUC---GACGUGCUUGAAAGGC .....((((((((((((....)))...((..((((((....)))))).)).........---)))).)))))...... ( -13.80, z-score = 0.43, R) >consensus AAUCACAAUUUGCCAGGAUUCA_______ACU_UCCUAACUUCUUUAGGCCUUAGCCUCG__GGCGGGCUUGAAGCUC ..........................................(((((((((...............)))))))))... ( -7.74 = -8.00 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:40 2011