| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,561,804 – 15,561,865 |
| Length | 61 |
| Max. P | 0.980882 |
| Location | 15,561,804 – 15,561,865 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 82.26 |
| Shannon entropy | 0.30794 |
| G+C content | 0.45464 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -17.45 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15561804 61 + 21146708 UUGCAUGUUGCAUCUGCAACAAAAGCAAAACCCA---GCGGAUGCGUACAAAGUAUCUGCAAGC--------- ((((.((((((....))))))...))))......---((((((((.......))))))))....--------- ( -22.30, z-score = -3.76, R) >droSim1.chr2R 14267103 61 + 19596830 UUGCAUGUUGCAUCUGCAACAAAAGCAAAGCCCA---GCGGAUGCGUACAAAGUAUCUGCAAGC--------- ((((.((((((....))))))...))))......---((((((((.......))))))))....--------- ( -22.30, z-score = -3.18, R) >droSec1.super_1 13076354 61 + 14215200 UUGCAUGUUGCAUCUGCAACAAAAGCAAAGCCCA---GCGGAUGCGUACAAAGUAUCUGCAAGC--------- ((((.((((((....))))))...))))......---((((((((.......))))))))....--------- ( -22.30, z-score = -3.18, R) >droYak2.chr2R 7528232 61 - 21139217 UUGCAUGUUGCAUCUGCAACAAGAGCAAAGCGCA---ACGGAUGCGUACAAAGUAUCUGCAAGU--------- ((((.((((((....))))))...((...)))))---)(((((((.......))))))).....--------- ( -18.60, z-score = -1.35, R) >droEre2.scaffold_4845 9761901 61 + 22589142 UUGCAUGUUGCAUCUGCAACAAAAGCAAAGCGCA---ACGGAUGCGCACAAAGUAUCUGCAAGC--------- (((((((((((....))))))........(((((---.....)))))..........)))))..--------- ( -19.80, z-score = -1.81, R) >droAna3.scaffold_13266 10165938 73 - 19884421 UUGCAUGUUGCAGUUGCUGCAAAGGAUAUGGAUAUAUGUAUAUGCGAACAAAGUAUCUACAAGCUACACAAGC (((((((((((((...))))))...(((((....))))).)))))))...............(((.....))) ( -12.80, z-score = 1.23, R) >consensus UUGCAUGUUGCAUCUGCAACAAAAGCAAAGCCCA___GCGGAUGCGUACAAAGUAUCUGCAAGC_________ ((((.((((((....))))))...)))).........((((((((.......))))))))............. (-17.45 = -17.90 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:36 2011