| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,553,648 – 15,553,714 |
| Length | 66 |
| Max. P | 0.818976 |
| Location | 15,553,648 – 15,553,714 |
|---|---|
| Length | 66 |
| Sequences | 12 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 78.58 |
| Shannon entropy | 0.46897 |
| G+C content | 0.62247 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -18.94 |
| Energy contribution | -18.72 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15553648 66 + 21146708 GCUUGGCGCACUUAAUUGCGCCGUUGUGGGCGUGGUGGGCGUCCCUGCCCCCAUAUCGCUGGAGGC ((((((((((......))))))...((((..((((.(((((....))))))))).))))...)))) ( -30.10, z-score = -1.14, R) >droGri2.scaffold_15112 2113553 66 + 5172618 ACUGGGCGCAUUCAUUUGCGACGCAGUGGGCGUGGUCGGCAUCACACCACCCAUAUCGCUAGACGC ((((.(((((......)))).).)))).((.(((((.(......)))))))).............. ( -21.10, z-score = -0.46, R) >droMoj3.scaffold_6496 20942059 66 + 26866924 AUUGGGUGCACUCAUUUGCGCAGCUGUUGGCGUCGUAGGCGUUACACCGCCCAUUUCACUAGAGGC .....(((((......))))).(((.((((.(..((.((((......)))).))..).)))).))) ( -17.90, z-score = 0.41, R) >droVir3.scaffold_12875 16504060 66 - 20611582 ACUGGGCGCAUUCAUUUGCGCCGCUGUGGGCGUGGUGGGCGUCAUGCCACCCGUAUCGCUAGACGC ....((((((......))))))((((((((((.(((((........)))))))).)))).)).).. ( -27.20, z-score = -0.37, R) >droWil1.scaffold_180701 1660468 66 + 3904529 AUUCGGUGCUUGCAUUUGUGUUGCUGUCGGCGUUGUGGGUGACACAGCACCCAAAUCGCUGGAUGU ...(((..(........)..)))...((((((...((((((......))))))...)))))).... ( -21.60, z-score = -0.56, R) >droPer1.super_2 134980 66 - 9036312 ACUUGGCGCAUUCGUUUGUGCCGCAGUGGGUGUGGUGGGCGUCUGAGCUCCCAAAUCGCUCGAUGC ....((((((......))))))(((.(((((((((.((((......)))))))...)))))).))) ( -28.10, z-score = -2.16, R) >dp4.chr3 12683340 66 + 19779522 ACUUGGCGCAUUCGUUUGUGCCGCAGUGGGUGUGGUGGGCGUCUGAGCUCCCAAAUCGCUCGAUGC ....((((((......))))))(((.(((((((((.((((......)))))))...)))))).))) ( -28.10, z-score = -2.16, R) >droAna3.scaffold_13266 10158716 66 - 19884421 AUUUGGGGCAUUCAUUUGUGCCGCUGUCGGCGUGGUGGGCGUCCCAGCUCCCAGAUCACUGGAGGC ...((((((.((((.(..(((((....)))))..))))).))))))((..((((....))))..)) ( -29.90, z-score = -2.09, R) >droEre2.scaffold_4845 9753939 66 + 22589142 GCUUGGCGCACUUAAUUGCGCCGUUGUAGGCGUGGUGGGUGUCCCUGCCCCCAUAUCGCUGGAGGC ....((.(((((((.(..((((......))))..)))))))).)).(((.(((......))).))) ( -27.90, z-score = -1.17, R) >droYak2.chr2R 7520102 66 - 21139217 GCUUGGCGCACUCAAUUGCGCCGUUGUGGGCGUGGUGGGUGUCCCUGCCCCCAUAUCGCUGGAGGC ....((.(((((((.(..((((......))))..)))))))).)).(((.(((......))).))) ( -29.40, z-score = -1.08, R) >droSec1.super_1 13068374 66 + 14215200 GCUUGGCGCACUUAAUUGCGCCGUUGUGGGCGUGGUGGGCGUCCCUGCCCCCAUAUCGCUGGAGGC ((((((((((......))))))...((((..((((.(((((....))))))))).))))...)))) ( -30.10, z-score = -1.14, R) >droSim1.chr2R 14259077 66 + 19596830 GCUUGGUGCACUUAAUUGCGCCGUUGUGGGCGUGGUGGGCGUCCCUGCCCCCAUAUCGCUGGAGGC ((((((((((......))))))...((((..((((.(((((....))))))))).))))...)))) ( -28.20, z-score = -0.91, R) >consensus ACUUGGCGCACUCAUUUGCGCCGCUGUGGGCGUGGUGGGCGUCCCAGCCCCCAUAUCGCUGGAGGC ....((((((......))))))(((...((((...((((.(......).))))...))))...))) (-18.94 = -18.72 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:36 2011