Locus 4761

Sequence ID dm3.chr2R
Location 15,548,204 – 15,548,298
Length 94
Max. P 0.999058
window6538

overview

Window 8

Location 15,548,204 – 15,548,298
Length 94
Sequences 12
Columns 96
Reading direction reverse
Mean pairwise identity 82.79
Shannon entropy 0.38402
G+C content 0.37007
Mean single sequence MFE -28.11
Consensus MFE -20.60
Energy contribution -20.17
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -3.40
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.62
SVM RNA-class probability 0.999058
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15548204 94 - 21146708
AAAAGAAGGGAACGGUUGCUGAUGAUGUAGUUUGAAACUCUCACAAUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUGGCAAUCGAUCUACGUU
...(((((((((((((..(((.((((((((.(((.........))).)--))))))))))..)))))))))))))..................... ( -30.40, z-score =  -4.08, R)
>droSim1.chr2R 14253639 94 - 19596830
AAAAGAAGGGAACGGUUGCUGAUGAUGUAGUUCGAAACUCUCACAAUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUGGCAAUCGAUCUACGUU
...(((((((((((((..(((.((((((((.................)--))))))))))..)))))))))))))..................... ( -28.43, z-score =  -3.28, R)
>droSec1.super_1 13062937 94 - 14215200
AAAAGAAGGGAACGGUUGCUGAUGAUGUAGUUCGAAACUCUCACAAUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUGGCAAUCGAUCUACGUU
...(((((((((((((..(((.((((((((.................)--))))))))))..)))))))))))))..................... ( -28.43, z-score =  -3.28, R)
>droYak2.chr2R 7514633 94 + 21139217
AAAAGAAGGGAACGGUUGCUGAUGAUGUAGUUCGAAACUCUCUCAAUU--UAUAUCACAGUGGCUGUUCUUUUUUAUUUGGCAAUCGAUCUACAUU
...(((((((((((((..(((.((((((((...((.......))...)--))))))))))..)))))))))))))..................... ( -29.40, z-score =  -4.25, R)
>droEre2.scaffold_4845 9748458 94 - 22589142
AAAAGAAGGGAACGGUGGCUGAUGAUGUAGUUCGAAACUCUCACAAUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUGCCAAUCGAUCUGCGUU
...(((((((((((((.((((.((((((((.................)--))))))))))).)))))))))))))..................... ( -27.43, z-score =  -2.36, R)
>droAna3.scaffold_13266 10152208 90 + 19884421
AAAAGAAGGGAACGGUCGCUGCUGAUGUAGUU----AUUCGCAUCAUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUGCCAAUCGAUCUACGUU
...((((((((((((((((((.((((((((..----...........)--)))))))))))))))))))))))))..................... ( -30.22, z-score =  -4.15, R)
>dp4.chr3 12676787 94 - 19779522
AAAAGAAGGGAACGGUUGCUGCUGAUGUAGUUCAAGUUUUGCACAAUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUGCCAAUCGAUCACCGAU
...(((((((((((((..(((.((((((((.....(.....).....)--))))))))))..)))))))))))))........((((.....)))) ( -30.10, z-score =  -3.26, R)
>droPer1.super_2 129428 94 + 9036312
AAAAGAAGGGAACGGUUGCUGCUGAUGUAGUUCAAGUUUCGCACAAUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUGCCAAUCGAUCAACGAU
...(((((((((((((..(((.((((((((.....(.....).....)--))))))))))..)))))))))))))........((((.....)))) ( -29.70, z-score =  -3.25, R)
>droWil1.scaffold_180701 1650984 93 - 3904529
AAAAGAAGGGAACGGUUGCUGUUGAUGUAGUAUACCAUUUUGUUUAACAAUAUAUCACAGUGGCUGUUCUUUUUUGUUUAACAAUCAAUCAAC---
...(((((((((((((..((((.((((((.((.((......)).))....))))))))))..)))))))))))))..................--- ( -28.70, z-score =  -4.46, R)
>droMoj3.scaffold_6496 20935941 94 - 26866924
AAGAGAAGAGAACGUUCGCUGUUGAUGUAGUCGAAUUCAUUUAAUCUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUAACAAUUUUUCAACGUU
((.(((((((((((..((((((.(((((((.................)--))))))))))))..))))))))))).)).................. ( -24.93, z-score =  -3.08, R)
>droVir3.scaffold_12875 16498534 90 + 20611582
AAAGGAAGAGAACGUUCGCUGUUGAUGUAGUCGACCUU-UGUACUCUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUAGCAAUUUCUCAAC---
...(((((((((((..((((((.(((((((...((...-.)).....)--))))))))))))..)))))))))))..................--- ( -24.90, z-score =  -2.68, R)
>droGri2.scaffold_15112 2107903 94 - 5172618
AAAGGAAGAGAACGCUCGCUGCUGAUGUAGUUCAUGAUUCAAAUAUUU--UAUAUCACAGUGGCUGUUCUUUUUUGUUUAUCAAUGAUUCAACUUU
...((((((((((((.(((((.((((((((.................)--)))))))))))))).))))))))))..................... ( -24.63, z-score =  -2.62, R)
>consensus
AAAAGAAGGGAACGGUUGCUGAUGAUGUAGUUCAAAACUCUCACAAUU__UAUAUCACAGUGGCUGUUCUUUUUUGUUUGGCAAUCGAUCAACGUU
...(((((((((((.((((((.(((((((.....................))))))))))))).)))))))))))..................... (-20.60 = -20.17 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:28 2011