| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,305,559 – 3,305,666 |
| Length | 107 |
| Max. P | 0.896465 |
| Location | 3,305,559 – 3,305,666 |
|---|---|
| Length | 107 |
| Sequences | 9 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 66.93 |
| Shannon entropy | 0.68454 |
| G+C content | 0.32896 |
| Mean single sequence MFE | -24.64 |
| Consensus MFE | -8.72 |
| Energy contribution | -8.82 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3305559 107 - 23011544 UAUUUAUCAAUUGGGGCGCGUGUUUAAGUAGAUUAAAUGGGGCUACUUAAUCAUGUGC-AGGGCAUAUAGCGUAUAUAUGUAUAUAUACAUAUAUUGAUACUAUACUU ....(((((((...((((((((.((((((((...........)))))))).)))))))-...(((((((.....))))))).......)....)))))))........ ( -28.60, z-score = -2.25, R) >droSim1.chr2L 3243225 102 - 22036055 UAUUUAUCAAUUGGGGCGCGUGUUUAAGUAGAUUAAAUGGGGCUACUUAAUCAUGUGCUAUGCCCUGCAGCGUAUAUAUAUAU------AUAUAUUGAUACUGUACUU ....(((((((.((((((((((.((((((((...........)))))))).)))))))....)))......((((((....))------)))))))))))........ ( -26.80, z-score = -1.15, R) >droYak2.chr2L 3290183 105 - 22324452 UAUUUAUCAAUUGGUGCGCGUGUUUAAGUAGAUUAAAUGGGGCUACUUAAUCAUGUGC-UGGGUAUAUAGCGUAUAUGUAUAUGUAU--AUAUAUUGAUACUGUACUU ....(((((((....(((((((.((((((((...........)))))))).)))))))-...(((((((.(((((....))))))))--)))))))))))........ ( -28.80, z-score = -1.96, R) >droEre2.scaffold_4929 3336709 97 - 26641161 UAUUUAUCAAUUGGGGCGCGUGUUUAAGUAGAUUAAAUGGGGCUACUUAAUCAUGUGC--UGGUAUAUAGCGUAUAUAUAC---------UGUAUUGAUACUGUACUU ....(((((((...((((((((.((((((((...........)))))))).)))))))--)((((((((.....)))))))---------)..)))))))........ ( -30.00, z-score = -3.46, R) >droAna3.scaffold_12916 2749336 103 + 16180835 UAUUUAUUUAUUUUAGCGCGUGUUUAAGUAGAUUAAAUGAGGCUACUUAAUCAUGUGC-AGGGUAUAUACUUUUAUUCCGGCUCGAU--ACUCCUCGAAAGUAUUG-- ...............(((((((.((((((((.((....))..)))))))).)))))))-.(((.(((......))))))....((((--(((.......)))))))-- ( -25.00, z-score = -2.10, R) >dp4.chr4_group3 5403987 95 + 11692001 UAUAUAUCAAUUGUGGCGCGUUUCUAAGUUGAUUAAACGCUGCUACUUAAUCAGGUGC-UGACUAUACGA-GUAGUAACAU--------AUAUAUUGCUAUUCUU--- ............((((((((((((......))...))))).)))))....((((...)-)))......((-(((((((...--------.....)))))))))..--- ( -21.60, z-score = -1.24, R) >droPer1.super_1 2502284 95 + 10282868 UAUAUAUCAAUUGUGGCGCGUUUCUAAGUUGAUUAAACGCUGCUACUUAAUCAUGUGC-UGACUAUACGA-GUAGUAACAU--------AUAUAUUGCUAUUCUU--- ..(((((.....((((((((((((......))...))))).)))))......))))).-.........((-(((((((...--------.....)))))))))..--- ( -20.90, z-score = -1.24, R) >droWil1.scaffold_181132 748588 100 - 1035393 UAUUUAUCAAUUAUAGCGCGUGUUUAAGUAGAUUAAAUGCGGCUACUUAAUCAUACAA-AUACUAUAGAAUAUCAUUAUGUAU------AUGCGU-GAGUUUCUCCUU .............((((.(((((((((.....))))))))))))).....(((..((.-((((.((((.......))))))))------.))..)-)).......... ( -17.90, z-score = -0.39, R) >droMoj3.scaffold_6500 702941 88 - 32352404 UAUUUAUCAGUUCUAGCGCGUGUUUAUUUAGAUUAAAUGUAUCUGUGUGUGAGUGUGUGACUGAAUGCGCAUGUGUUGAGUU-------GUAAAU------------- .(((((.((..((.(((((((((.(((((((.(((......((.......)).....)))))))))).)))))))))))..)-------))))))------------- ( -22.20, z-score = -2.02, R) >consensus UAUUUAUCAAUUGUGGCGCGUGUUUAAGUAGAUUAAAUGGGGCUACUUAAUCAUGUGC_AGGGUAUACAGCGUAUUUAUAUAU______AUAUAUUGAUACUCUACUU ...............((((((...(((((((...........)))))))...)))))).................................................. ( -8.72 = -8.82 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:35 2011