| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,514,284 – 15,514,377 |
| Length | 93 |
| Max. P | 0.809792 |
| Location | 15,514,284 – 15,514,377 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.85 |
| Shannon entropy | 0.33011 |
| G+C content | 0.47130 |
| Mean single sequence MFE | -17.79 |
| Consensus MFE | -12.00 |
| Energy contribution | -13.12 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15514284 93 + 21146708 GCUCUCUCUCCACUCACUCUUUUGGCAUUUUCU--CAUUAUCCGCCGGCAACACAACAAGAAUUUUCCGCAAGGAAAAACGCCCGCCGAAAUUAA ...................(((((((.......--...........(....)..........((((((....))))))......))))))).... ( -18.70, z-score = -2.54, R) >droSim1.chr2R 14217795 93 + 19596830 GCUCUCUCUCCACUCACUCUUUUGGCAUUUUCU--CAUUAUCCGCCGGCAACACAACAAGAAUUUUCCGCAAGGAAAAACGCCCGCCGAAAUUAA ...................(((((((.......--...........(....)..........((((((....))))))......))))))).... ( -18.70, z-score = -2.54, R) >droSec1.super_1 13028819 93 + 14215200 GCUCUCUCUCCACUCACUCUUUUGGCAUUUUCU--CAUUAUCCGCCGGCAACACAACAAGAAUUUUCCGCAAGGAAAAACGCCCGCCGAAAUUAA ...................(((((((.......--...........(....)..........((((((....))))))......))))))).... ( -18.70, z-score = -2.54, R) >droYak2.chr2R 7478982 93 - 21139217 GCUCUCUUUCCACUCACUCUUUUGGCAUUUUCU--CAUUAUCCGCCGGCAACACAACAAGAAUUUUUCGCAAGGAAAAACGCCCGCCGAAAUUAA ...................(((((((.......--...........(....)..........((((((....))))))......))))))).... ( -15.80, z-score = -1.25, R) >droEre2.scaffold_4845 9712455 93 + 22589142 GCUCUCUUUCCACUCACUCUUUUGCCAUUUUCU--CAUUAUCCGCCGGCAACACAACAAGAAUUUUCCGCAAGGAAAAGCGCCCGCCGAAAUUAA .................................--.....((.((.(((....(.....)..((((((....))))))..))).)).))...... ( -15.80, z-score = -1.30, R) >droAna3.scaffold_13266 10117529 80 - 19884421 -----------GCUCUCCGGCGUGGCACGGCCAGGCAUUCCAUUCCAACAACAUAACAAGAAUGUGCCACA---CAACAC-CCAGCCGAAAUGAA -----------......((((.((((...))))((((...(((((..............)))))))))...---......-...))))....... ( -19.04, z-score = -0.89, R) >consensus GCUCUCUCUCCACUCACUCUUUUGGCAUUUUCU__CAUUAUCCGCCGGCAACACAACAAGAAUUUUCCGCAAGGAAAAACGCCCGCCGAAAUUAA ...................(((((((....................(....)..........((((((....))))))......))))))).... (-12.00 = -13.12 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:21 2011