| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,492,830 – 15,492,930 |
| Length | 100 |
| Max. P | 0.601826 |
| Location | 15,492,830 – 15,492,930 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.95 |
| Shannon entropy | 0.46008 |
| G+C content | 0.53717 |
| Mean single sequence MFE | -34.44 |
| Consensus MFE | -13.27 |
| Energy contribution | -13.54 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.601826 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 15492830 100 + 21146708 GCAUUUGGCCAU-UUGGCCAG---AUCUCUUAUCUCAGUUAGCAACGCUCAUUAGUCACAGCGUGUGG---UAGUUGGGG-AGUGGGGCAUUGUGGUUGGGGGUGGGU------- ..((((((((..-..))))))---))..((((((((.....((((.((((..((.((.((((......---..))))..)-).)))))).)))).....)))))))).------- ( -34.30, z-score = -1.79, R) >droSim1.chr2R 14199876 100 + 19596830 GCAUUUGGCCAU-UUGGCCAG---AUCUCUUAUCUCAGUUAGCAACGCUCAUUAGUCACAGCGUGUGG---UAGUUGGGG-AUUGGGGCGUUGUGGUUGGGUGUGGGU------- ..((((((((..-..))))))---))..((((((((((...(((((((((..(((((.((((......---..))))..)-)))))))))))))..))))).))))).------- ( -38.90, z-score = -3.38, R) >droSec1.super_1 13011971 101 + 14215200 GCAUUUGGCCAUCUUGGCCAG---AUCUCUUAUCUCAGUUAGCAACGCUCAUUAGUCACAGCGUGUGG---UAGUUGGGG-AUUGGGGCGUUGUGGUUGGGUGUGGGU------- ..((((((((.....))))))---))..((((((((((...(((((((((..(((((.((((......---..))))..)-)))))))))))))..))))).))))).------- ( -38.90, z-score = -2.99, R) >droYak2.chr2R 7460570 100 - 21139217 GCAUUCGGCCAU-UUGGCCAG---AUCUCUUAUCUCAGUUAGGAACGCUCAUUAGUCACAGCGUGUGU---UAGUUGGGG-AUGGGGGCACUGUGGUUGGGGGCGGGG------- ....((.(((.(-(..((((.---(.((((((((((..((((.((((((..........))))).).)---)))...)))-)))))))...).))))..))))).)).------- ( -32.80, z-score = -0.96, R) >droEre2.scaffold_4845 9694696 100 + 22589142 GCAUUUGGCCAU-UUGGCCAG---AUCUCUUAUCUCAGUUAGGAACGCUCAUUAGUCACAGCGUGUGG---UAGUUGGGG-AUUGGGGCAUUUUGGUUGGGGGCGGGG------- ..((((((((..-..))))))---))((((..((((((..((((..((((..(((((.((((......---..))))..)-)))))))).))))..))))))..))))------- ( -33.40, z-score = -2.06, R) >droWil1.scaffold_180701 1539518 104 + 3904529 GCAUUUGGCCAGUUUGU--------UCUCUUAUCUUGGUUAGCAACGCUCAUUAGUCACAGCGGGAGGAUCUAAGUGGGACGUGAGGGGGAAGAGGAGGGAAGGGGAGGGCC--- ......((((..(((.(--------((((((.((((..((..((.((((((((((((.(....)...)).)).)))))).))))..))..)))).))))))).)))..))))--- ( -30.90, z-score = -0.77, R) >droVir3.scaffold_12875 16407965 95 - 20611582 -------------CCGGCCAGUUCAUUUCUUAUCUAAGUCGGCAAUGCUCAUUAGUCACAGCAUGGGG---GCGUUGUGGUAUUGGAGCG----GGUAGGGGGUGGGGAGGUAAC -------------...(((..(((((..(((((((..(....)...((((.....(((((((......---..))))))).....)))))----))))))..)))))..)))... ( -31.90, z-score = -2.70, R) >consensus GCAUUUGGCCAU_UUGGCCAG___AUCUCUUAUCUCAGUUAGCAACGCUCAUUAGUCACAGCGUGUGG___UAGUUGGGG_AUUGGGGCGUUGUGGUUGGGGGUGGGG_______ ........((...(..((((......((((..(((((((((...(((((..........))))).......)))))))))....)))).....))))..)....))......... (-13.27 = -13.54 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:16 2011