| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,487,061 – 15,487,155 |
| Length | 94 |
| Max. P | 0.937165 |
| Location | 15,487,061 – 15,487,155 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.69 |
| Shannon entropy | 0.24797 |
| G+C content | 0.41043 |
| Mean single sequence MFE | -24.91 |
| Consensus MFE | -18.84 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15487061 94 + 21146708 UUGCAGUUUUUA----------UGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACACUCGCA-CUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((.....----------.))))))(((((((((.......(((........))).........(((-((((...)))))))))))))))).......... ( -25.90, z-score = -2.82, R) >droSim1.chr2R 14194019 94 + 19596830 UUGCAGUUUUUA----------UGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACACUCGCA-CUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((.....----------.))))))(((((((((.......(((........))).........(((-((((...)))))))))))))))).......... ( -25.90, z-score = -2.82, R) >droSec1.super_1 13006082 94 + 14215200 UUGCAGUUUUUA----------UGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACACUCGCA-CUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((.....----------.))))))(((((((((.......(((........))).........(((-((((...)))))))))))))))).......... ( -25.90, z-score = -2.82, R) >droYak2.chr2R 7454545 94 - 21139217 UUGCUGUUUUUA----------UGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACACUCGCA-CUCGGCUCAAGUGUUGGAAAAUACAAUUGCCUC .(((.((.....----------.)).)))(((((((((.......(((........)))...(((((.((.-....))...)))))))))))))).......... ( -19.40, z-score = -0.98, R) >droEre2.scaffold_4845 9688966 94 + 22589142 UUGCAGUUUUUA----------UGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACACUCGCA-CUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUC .((((((.....----------.))))))(((((((((.......(((........))).........(((-((((...)))))))))))))))).......... ( -25.90, z-score = -3.01, R) >droAna3.scaffold_13266 10095949 94 - 19884421 UUGUAGUUUUUA----------UACUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACGCUGGCA-CUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((.....----------.))))))((((((((........(((........)))........((((-((((...)))))))))))))))).......... ( -24.00, z-score = -1.98, R) >dp4.chr3 12618741 101 + 19779522 UUGUAGCUUUUACGAG----UAUGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACGCUCGCCUCUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((.........----...))))))(((((((((...(((.(((........))).........(((....)))....))).))))))))).......... ( -26.50, z-score = -2.18, R) >droPer1.super_2 72201 101 - 9036312 UUGUAGCUUUUACGAG----UAUGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACGCUCGCCUCUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((.........----...))))))(((((((((...(((.(((........))).........(((....)))....))).))))))))).......... ( -26.50, z-score = -2.18, R) >droWil1.scaffold_180701 1529496 94 + 3904529 UUGCAGUUUUUA----------UGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACGCUCGCU-CUCGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((.....----------.))))))(((((((((...(((.(((........))).....((.((..-..))))....))).))))))))).......... ( -24.80, z-score = -2.48, R) >droVir3.scaffold_12875 16399649 99 - 20611582 UUACAGUUUUUCAGCGCUUUUAUGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUGCCACACUACG-----CUCAGCUCAAGUGUUGGAAAAUACAAUUGCCA- .....((((((((((((((....((((((((...(((........)))...)))).((........)-----).))))..))))))))))))))..........- ( -24.50, z-score = -1.85, R) >droMoj3.scaffold_6496 20841493 98 + 26866924 UUACAGUUUUUCAGCGCUUUUAUGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUGCCAC--UACG-----CUCGGCUCAAGUGUUGGAAAAUACAAUUGCCAA .....((((((((((((((....((((((((...(((........)))...)))))((...--...)-----)..)))..))))))))))))))........... ( -24.70, z-score = -1.72, R) >consensus UUGCAGUUUUUA__________UGCUGCAUGUUUUCCACUUCACAGGAUUUUAUGUUCCACUACACUCGCA_CUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUG .((((((................))))))(((((((((...(((.(((........))).........((......))....))).))))))))).......... (-18.84 = -19.23 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:15 2011