| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,463,003 – 15,463,060 |
| Length | 57 |
| Max. P | 0.683442 |
| Location | 15,463,003 – 15,463,060 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 97.89 |
| Shannon entropy | 0.03800 |
| G+C content | 0.42456 |
| Mean single sequence MFE | -10.50 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.98 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15463003 57 - 21146708 GUUUUCCGUGUAAGACAUUAAUAAGCCCAUUAUCGAAUAAUGGUCGCGCUCUUGCAG ........(((((((.........(((((((((...)))))))..))..))))))). ( -10.50, z-score = -1.07, R) >droSim1.chr2R 14164146 57 - 19596830 GUUUUCCGUGUAAGACAUUAAUAAGCCCAUUAUCGAAUAAUGGUCGCGCUCUUGCAG ........(((((((.........(((((((((...)))))))..))..))))))). ( -10.50, z-score = -1.07, R) >droSec1.super_1 12982204 57 - 14215200 GUUUUCCGUGUAAGACAUUAAUAAGCCCAUUAUCGAAUAAUGGUCGCGCUCUUGCAG ........(((((((.........(((((((((...)))))))..))..))))))). ( -10.50, z-score = -1.07, R) >droYak2.chr2R 7428335 57 + 21139217 GUUUUCCGUGUAAGACAUUAAUAAGCCCAUUAUCGAAUAAUGGUCGCGUUCUUGCAG ........(((((((.........(((((((((...)))))))..))..))))))). ( -10.50, z-score = -1.36, R) >droEre2.scaffold_4845 9662544 57 - 22589142 GUUUGCCGUGUAAGACAUUAAUCAGCCCAUUAUCGAAUAAUGGUCGCGCUCUUGCAG ........(((((((.........(((((((((...)))))))..))..))))))). ( -10.50, z-score = -0.31, R) >consensus GUUUUCCGUGUAAGACAUUAAUAAGCCCAUUAUCGAAUAAUGGUCGCGCUCUUGCAG ........(((((((.........(((((((((...)))))))..))..))))))). (-10.50 = -10.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:10 2011