| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,461,201 – 15,461,293 |
| Length | 92 |
| Max. P | 0.586906 |
| Location | 15,461,201 – 15,461,293 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 93.51 |
| Shannon entropy | 0.10468 |
| G+C content | 0.37404 |
| Mean single sequence MFE | -16.98 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.66 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15461201 92 - 21146708 -AAAAAACUUGGAAAAUCCUGAAAAUCCUGGAGCAUGCCUACAUGCGCCCUACUUUUUAGAACUCUUUGGCUUUGUAACUGUGUUUGCUAAAU -.................(((((((....((.(((((....))))).))....))))))).....((((((...............)))))). ( -16.66, z-score = -1.16, R) >droSim1.chr2R 14162344 92 - 19596830 -AAAAAACUUGGAAAAUCCUGAAAAUCCUGGAGCAUGCCUACAUGCGCCCUACUUUUUAGAACUCUUUGGCUUUGUAACUGUGUUUGCUAAAU -.................(((((((....((.(((((....))))).))....))))))).....((((((...............)))))). ( -16.66, z-score = -1.16, R) >droSec1.super_1 12980421 92 - 14215200 -AAAAAACUUGGAAAAUCCUGAAAAUCCUGGAGCAUGCCUACAUGCGCCCUACUUUUUAGAACUCUUUGGCUUUGUAACUGUGUUUGCUAAAU -.................(((((((....((.(((((....))))).))....))))))).....((((((...............)))))). ( -16.66, z-score = -1.16, R) >droYak2.chr2R 7426432 93 + 21139217 AAAUCAAAAAAAAAAAGUUCGAAAAUCCUGGAGCAUGCCUACAUGCGCCCUACUUUUUAGAACUCUUUGGCUUUGUAACUGUGUUUGCUAAAU ...............(((((.((((....((.(((((....)))))..))....)))).))))).((((((...............)))))). ( -17.96, z-score = -1.57, R) >consensus _AAAAAACUUGGAAAAUCCUGAAAAUCCUGGAGCAUGCCUACAUGCGCCCUACUUUUUAGAACUCUUUGGCUUUGUAACUGUGUUUGCUAAAU ..................(((((((....((.(((((....))))).))....))))))).....((((((...............)))))). (-15.60 = -15.66 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:09 2011