| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,459,198 – 15,459,292 |
| Length | 94 |
| Max. P | 0.511084 |
| Location | 15,459,198 – 15,459,292 |
|---|---|
| Length | 94 |
| Sequences | 9 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 84.24 |
| Shannon entropy | 0.33680 |
| G+C content | 0.31871 |
| Mean single sequence MFE | -12.80 |
| Consensus MFE | -6.62 |
| Energy contribution | -6.62 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15459198 94 + 21146708 UUGAGCGCAAAAUCUUAUGCAAAUAUUAUGUUUGCAUUUUCCACUUUUAUAUUUAACUUGCCUCACUUCACUUUUUGUUUUCUUUCACUUCGUC .((((.((((......((((((((.....)))))))).........(((....))).))))))))............................. ( -13.00, z-score = -2.62, R) >droSim1.chr2R 14160377 93 + 19596830 UUGAGCGCAAAAUCUUAUGCAAAUAUUAUGUUUGCAUUUUCCACUUU-AUAUUUAACUUGCCUCACUUCACGUUUUGUUUUCUUUCACUUCGUC .((((.((((......((((((((.....))))))))........((-(....))).))))))))....(((...((........))...))). ( -13.50, z-score = -2.38, R) >droSec1.super_1 12978491 93 + 14215200 UUGAGCGCAAAAUCUUAUGCAAAUAUUAUGUUUGCAUUUUCCACUUU-AUAUUUAACUUGCCUCACUUCACUUUUUGUUUUCUUUCACUUCGUC .((((.((((......((((((((.....))))))))........((-(....))).))))))))............................. ( -13.00, z-score = -2.60, R) >droYak2.chr2R 7424329 93 - 21139217 UUGAGCGCAAAAUCUUAUGCAAAUAUUAUGUUUGCAUUUUCCACUUU-AUAUUUAACUUGCCUCACUUCACUUUUUGUUUUCUUUCACUUCGUC .((((.((((......((((((((.....))))))))........((-(....))).))))))))............................. ( -13.00, z-score = -2.60, R) >droEre2.scaffold_4845 9658712 93 + 22589142 UUGAGCGCAAAAUCUUAUGCAAAUAUUAUGUUUGCAUUUUCCACUUU-AUAUUUAACUUGCCUCACUUCGCUUUUUGUUUUCUUUCACUUCGUC .((((.((((......((((((((.....))))))))........((-(....))).))))))))............................. ( -13.00, z-score = -2.08, R) >droAna3.scaffold_13266 10067144 88 - 19884421 UUGAGCAGAAAAUCUUAUGCAAAUAUUAUGUUUGCAUUUUCCACUUU-AUAUUUAACUUGCCUCACUUCACUUUUUGUUUUCCUUUGGC----- ..(((((((((.....((((((((.....))))))))....((..((-(....)))..))...........))))))))).........----- ( -10.70, z-score = -0.41, R) >dp4.chr3 12590940 91 + 19779522 GCGAGUG-AAAAUCUUAUGCAAAUAUUAGGUUUGCAUUUUCCACUUU-AUAUUUAACUUUACUCACUUCACUUUU-GUUUUCCCUCUCUCCACU ..(((((-((......((((((((.....))))))))........((-(....))).)))))))...........-.................. ( -12.30, z-score = -2.57, R) >droPer1.super_2 44148 92 - 9036312 GCGAGUG-AAAAUCUUAUGCAAAUAUUAGGUUUGCAUUUUCCACUUU-AUAUUUAACUUUCCUCACUUCACUUUUUGUUUUCCCUCUCUCCACU ..(((.(-(((((...((((((((.....))))))))........((-(....)))....................)))))).)))........ ( -11.80, z-score = -2.38, R) >droGri2.scaffold_15112 1992068 85 + 5172618 UUGUGUGCAA---CUUAUGCAAAUAGUUUGUUUGCAUUUUUCACUUG-ACAUUUAACCUGAUAUCGGUUUUGUUUUGCGUUUUGUCAUU----- ......((((---...((((((((.....)))))))).........(-(((...((((.......)))).))))))))...........----- ( -14.90, z-score = -0.49, R) >consensus UUGAGCGCAAAAUCUUAUGCAAAUAUUAUGUUUGCAUUUUCCACUUU_AUAUUUAACUUGCCUCACUUCACUUUUUGUUUUCUUUCACUUCGUC ................((((((((.....))))))))......................................................... ( -6.62 = -6.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:09 2011